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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagttcttttcagtttttgatgtaaattcatactttgctacccatgaagaaaatgaattctgatagttaatttagctttagtctcttcagatgtgtcataatatattcatatacagatttttctttccaatttca

Basic information

species Glycine max
transcript GLYMA18G04160.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g01960.t01 (Vitis vinifera), 5'ss of exon 4
GAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgt--agttctttt-cagtttttgatgtaaattcatactttgctacccatgaagaaaatgaattctgatagttaatttagctttagtctcttcagatgtgtcataatatattcatatacagatttttctttccaatttca
  ||||||||||||||||||| ||||| |||||||   |||||||| | || || || || || |||||||||||||||||  |||| |||||||| |||||| |||  |||| |  | ||||   |  |      || | || |   || ||  | | | ||  ||    |||  ||   ||  | || | | |  | || | |                                       
-CGGTTGCATATGCCACCATCCATAGCACTTGCAACAAGAGGGCGTTTACAAGGCCTTAGGCTCCAACTTGCACTTCTTGACAGGGAATTTGATGACCTAGgtatgttaagttatagtacagtacctctttctctctctttctctctcacacac-atgcatatatatatgtatatgta---tatatata-tatatatatatatatt--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845619|gb|BF068698.1|BF068698
EST:     AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA                         GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: gi|208293168|gb|GE096404.1|GE096404
EST:     TCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA                         GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: TCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: gi|21255789|gb|BQ452677.1|BQ452677
EST:     AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA                         GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: gi|151407599|gb|EV277414.1|EV277414
EST:     AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA                         GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: gi|58016501|gb|CX703243.1|CX703243
EST:     AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA                         GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC