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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGAGTAAGCATAAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgtatcatgtattctattctgtatctcaagttaatatctttctggacagtctgcattagtttctttctggaaccaaaagtcagaatatccacg...

Basic information

species Glycine max
transcript GLYMA18G03870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 6
GCTCGAGTAAGCATAAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgtatcatgtattctattctgtatctcaa--gtta-atatctttctggacagtctgcattagtttctttctggaaccaaaagtcagaatatccacg
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GCTCGAGGAAATGTCAGTACGGAGGGACAGAGTCTGAGAGTCCCTGGAAGTTATGTGAAGTGGATTGCCTGTGGTGGCCGACACAGTGCAGTAATCACAGgtaaacatttgatgactcactttttaattggttcaattgctatatggtatttttggttgaccaaataagagttggtattttattgta--ttaaggtaccttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193351844|gb|FK313885.1|FK313885
EST:     TTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAG                         ATGCTGGAGCTGTTCTTACATTTGGTTGGGGAACTTTATGGACAG
genomic: TTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgt ... gaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGA-CTTTATGGACAG
EST: gi|207797662|gb|GD771474.1|GD771474
EST:     ATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAG                         ATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
genomic: ATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgt ... gaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG