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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag

Basic information

species Glycine max
transcript GLYMA18G02210.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgca----tgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 ||   ||  |||    |||||||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||||||||| || || || ||||| || |||||||        ||||  ||   | |    | | | ||    ||   | | | || |       | |    | |||| || | ||  |    |      | | |||   | ||  |                                                 
TATTAAGAACAACTGCCTGATTGGTGGTGATGATTTCAAGAGTGGACAGACAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtac--caaccatatatcaaatcctttggctagcttttcgcattgaaacgtcgatattcttccggaaacttttttttatatataacctgataagaactttggcttttgttttcgtag------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgca-tgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 ||    |  |||   ||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| || ||||| || |||||       |  |||     | |  ||| |  | ||   | |||  | ||  |||       ||||| |   |  |  | | |||     || |||                                                                  
TATAAAAAACAACTGCTTGATTGGTGGTGACGACTTCAAGAGTGGACAGACCAAGATGAAATCTGTCTTGGTCGATTTCCTTGTTGGTGCTGGAATAAAGgtgggaacctagtatctc--tcttctatta-agatgaagtgtttttttggcaaatgacgttattgcaataactcttctatattttcattttcatgcag----------------------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtaca--ttgttgttata--ctaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 |||  ||  |||    |||| ||||| || |||||||||||||| |||||||| |||||||| ||  |||||||||||||||| || ||||| || ||||||||  || |   |  |  || || ||    | | |   |  ||||  |   ||| |  ||        |  |  |||| |   || |||||                                                                        
TATCAAGAACAACTGCCTGATCGGTGGTGACGACTTCAAGAGTGGGCAGACCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaatttatcaatgaaacctgatatccccccttcgaaatgtttttggc--agacgacatacttacaataattcgtgtatatg-ttcatgcag-----------------------------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G071174_T01 (Zea mays), 5'ss of exon 1
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacat--tgttgttatactaatgtcatatcatgggtgttatt----tttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatat-gtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
         |||  |  |||| || || || |||||||||||||| |||||||| ||||| ||||||||||| ||||| || || || ||||| || ||||||| |    | || |||    | |      ||   |  |  |    || | || || ||| | |  ||  |||   |    || ||| ||| |||| |   | |||   ||  | ||| || |  | ||  | | ||    |  | |  | | ||   | | |    
---------GAATTCGGTGATAGGAGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCTGTGTTGGTCGATTTCCTCGTCGGCGCTGGGATTAAGgtacgtaccatcgtcatatatgtatatctctatatataatgctgggattaattaagataatttgtgtttgacat---tcaagaataatctatccatctttaaatattggaattattaaagattggcacattggataataaggtggatttgttttttcccg-tag----

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G177461_T01 (Zea mays), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgat-tgacag
|||    | |||  |  |||| || || || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| || || || ||||| || ||||||||||  |  | || |  ||         |||  |    || |   | |  || | || ||  |||   |    || |||  |   |   |  |||  |   |  | | | | || | | |   ||  | |||     | |  ||||  || | |   ||
CATAAAAAAGAATTCGGTGATAGGAGGCGACGACTTTAAGAGTGGGCAGACCAAGATGAAGTCTGTGTTGGTCGATTTCCTCGTCGGTGCTGGAATTAAGgtacattccttgtctattgctgg--------gggcctgggattaagatgaattatttgtctttcacat---tcaagaataatcga---actttattagcatatcagataatataaggtggattctttttttctttctttttttcgtgtttgtgctgtcgtag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 2
-CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtaca--ttgttgttata--ctaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
  |||  ||  |||    |||| ||||  || |||||||||||||| |||||||| |||||||| ||  |||||||||| ||||| || ||| | || ||||||||  || |   |  |  || || ||    | | |   |  ||||  |   |||    ||        |  | ||||| |   || |||||                                                                        
CTATCAAGAACAACTGCCTGATCGGTGTTGACGACTTCAAGAGTGG-CAGACCAAGATGAAATCAGTCCTGGTTGATTTCCTTGTTGGTGCTAGAATAAAGgtacaatttatcaatgaaacctgatatccccccttcgaaatgtttttggc--agacgtcatacttacaataattcttgtatatg-ttcatgcag-----------------------------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G392513_T02 (Zea mays), 5'ss of exon 4
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtaca--ttgttgttata--ctaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 |||  ||  |||    |||| ||||| || |||||||||||||| |||||||| |||||||| ||  | ||||| || || || || ||||| || ||||||||  || |   |  |  || || ||    | | |   |  ||||  |   |||    ||        |  | ||| | |   || ||  |  |  |                                                                  
TATCAAGAACAACTGCCTGATCGGTGGTGACGACTTCAAGAGTGGGCAGACCAAGATGAAATCAGTCCTAGTTGAATTCCTAGTTGGTGCTGGAATAAAGgtacaatttatcaatgaaacctgatatccccccttcgaaatgtttttggc--agacggcatacttacaataattcttgcatatg-ttcattgagagcacctag--------------------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
|||   ||| |||   ||||| ||||| |||||||||||||||||||||||||| ||||| |||||  | || ||||| ||||| || || || ||||| |||| ||  |  || |  | | || ||  ||     |||||||   || |  ||      | || ||      | ||  ||||   ||||    ||| || ||||                                                        
CATAAAGAGAAACTGCTTGATCGGTGGTGATGACTTCAAGAGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTGGCGCCGGAATCAAAgtac-ttaatcctaaataagtatccta--attaaatttatttta--tatggtaa------cgttacaaaa--cgaaattaatt---gcatttatctatatgtatag-------------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 4
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 ||  ||| |||   |||||||||||| ||||| ||||||||||||||||| || |||||||| || ||||||||||| ||||| || ||||| || |||||| || |   | |  ||  |||  ||||| |     ||   | ||| |       | || | ||     || || ||  |  || | |      | ||||| | || ||                                                   
TATATCGAAGAATTGTTTGATTGGTGGGGATGATTTCAAGAGTGGTCAGACTAAGATGAAATCCGTTTTGGTTGATTTCCTTGTTGGAGCTGGCATTAAGgta-atagaattaaagct--tgtt-tatcaag-----taacctaacttg-----cttctcttctg-----ttagtgaaggaactaagaa------tggattt-tgtggcag--------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 |||  ||  ||   |||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| || || || || || ||||||||      |||||  |||   ||   |   |     || || |||||   |  || | ||    |     ||||       || ||  || ||| |   ||| | | |                                                     
GATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGgt------ttgtttaacttgcgtatcaagttactctttcttgttactgaaaatatttgtcacaag---actttg-----gtttcattgattgtg-tgtttttgtttatag---------------------------------------------------

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 6
CATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgttgttatactaatgtcatatcatgggtgttatttttactaggacaatctatcctttgcatgttttgtaaacaatttatgcatcgtgctagatttatatgtcaaaaatggagaaatgagttgattttttcaagtgttctgttgatgattgacag
 ||   |||||| | |||||||||||| ||||| || ||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||||||| ||  || |||     || || | |  ||    |||   ||   | |  |||   |    ||||||| | |   |  || |||| ||  || ||     | |||   |   ||| || |                                       
TATTAAGAGGAATAGTTTGATTGGTGGGGATGATTTTAAGAGTGGTCAAACCAAGATGAAATCTGTATTGGTGGATTTCCTTGTTGGGGCAGGCATCAAGgtatatcattttta---gcatttcctctgttgaaatttagaattttaaagtaaataagt---atgcatgtatag--gattatgtatgaataatgatattgaaagatgatgatggtggtgacag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502144|gb|AW203517.1|AW203517
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
EST: gi|19270872|gb|BM887128.1|BM887128
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
EST: gi|11413502|gb|BF425513.1|BF425513
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
EST: gi|11688725|gb|BF596401.1|BF596401
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
EST: gi|6454183|gb|AW184796.1|AW184796
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTGGGAAACAATGATGGTATGAAT
EST: gi|207834410|gb|GD806311.1|GD806311
EST:     CCAAAATGAAATCCGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAG                         CCAACATCTATAGTTAGTTACAACCATCTG
genomic: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCTGGTATCAAGgtacattgtt ... tgattgacagCCAACATCTATAGTTAGTTACAACCATCTG