1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGTGACCACTACGGTACCATGCACATCAAGGGCAGTGGCAACTATTCTTGCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgtaaatgcaactaggactgagactgcatgaattatttgttgtttacatttggatgatttgatagacaagtaatacactttattttcctgaaa...
species | Glycine max |
transcript | GLYMA18G01590.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAAACTGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|208067824|gb|GD864946.1|GD864946
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|8286012|gb|BE023500.1|BE023500
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAACGATGTTAEST: gi|208082346|gb|GD883880.1|GD883880
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAAEST: gi|23729543|gb|BU762863.1|BU762863
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAA
EST: GCAAACTGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|12773259|gb|BG238186.1|BG238186
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|209724148|gb|BW659682.1|BW659682
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAATCTATTATAGACAGAAATCCACATCAG GTCCATGGG-TTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|58015839|gb|CX702581.1|CX702581
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|298199576|gb|HO043453.1|HO043453
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACAGAAATTCAAGGAGCAATCCATTATTGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|14205607|gb|BG839285.1|BG839285
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|207781423|gb|GD752784.1|GD752784
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAEST: gi|58016257|gb|CX702999.1|CX702999
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
EST: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAG GTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
genomic: GCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgt ... tatataacagGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGACCACTACGGTACCATGCACATCAAGGGCAGTGGCAACTATTCTTGCAAACTGAAATTCAAGGAGCAGTCTATTATAGACAGAAATCCACATCAGgtaggattgtaaatgcaactaggactgagactgcatgaattatttgttgtttacatttggatgatttgatagacaagtaatacactttattttcctgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG