1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGgtaaatatgtccgcaatctgagtttgtgtgaaattcttgtttagtttaagaaaacattttctgttttctcatatataattacaaaaatgttacttttttt...
species | Glycine max |
transcript | GLYMA18G01280.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAG GCTGCTGCTAAGATTATGATGAAGAAAAAGAAGEST: gi|192334676|gb|FK025223.1|FK025223
genomic: GGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGgtaaatatgt ... atttttgcagGCTGCTGCTAAGATTATGATGAAGAAAAAGAAG
EST: GGCAG-ATGTTATTGATCTAA-TCTCACTGGTGTTTT-CTTTGCACACAG -CTGCTGCTA-GAT-ATGATGA-GAAAAEST: gi|192296853|gb|FG990229.1|FG990229
genomic: GGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGgtaaatatgt ... atttttgcagGCTGCTGCTAAGATTATGATGAAGAAAA
EST: GGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAG GCTGCTGCTAAGATTATGATGAAGAAAEST: gi|192333775|gb|FK025498.1|FK025498
genomic: GGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGgtaaatatgt ... atttttgcagGCTGCTGCTAAGATTATGATGAAGAAA
EST: TTTTTCTTTGCACACAG GCTGCTGCTAAGATTATGATGAAGAAAAAGAAG
genomic: TTTTTCTTTGCACACAGgtaaatatgt ... atttttgcagGCTGCTGCTAAGATTATGATGAAGAAAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGgtaaatatgtccgcaatctgagtttgtgtgaaattcttgtttagtttaagaaaacattttctgttttctcatatataattacaaaaatgttacttttttt
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