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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtatttataatttcctttatttaagaattttactgtttagttcctctgttcttatttttttgtcactgttttcccaggctttcaactctgggtggttctggtctggctatctggcctctcttggttacttctactcaactttttctagtttatattaattaccagaatgttcctttcag

Basic information

species Glycine max
transcript GLYMA18G01230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
--------AATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtatttataatttcctttatttaagaattttactgtttagttcctctgttcttatttttttgtcactgtt----ttcccaggctttc-aactctgggtggttctggtctggctatctggcctctct-tgg--ttacttctactcaactttttctagtttatattaattaccag--aatgttcctttcag
        ||| ||||| || || |||||| | |||||||||||||||||  || ||||  ||||||||||||| ||||||||| || |||||||||||||| || | |||||||     || ||  |     |  |  |  | |    ||   ||| ||  |    ||||||||||||| | || | | || |  |||| ||||| |||| |   |   |||  |||  |    |  |   ||  ||  | |   |  | |||    |    | |||| ||
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggctttctagctttagatgatg-tggtgtggctctctgactcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag

upper sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 3
--------AATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtatttata------atttcctttatttaaga-attttactgtttagttcctctgttcttatttttttgtcactgttttcccaggctttcaactctgggtggttctggtctggctatctggcctctct--tggttacttctactcaactt---tttctagtttatattaattaccagaatgttcctttcag
        ||  ||||||||||||| ||| ||||||||||||||||| ||  |||| ||  |||||||||| || || |||||| || |||||||||  ||        | |    | ||||| | | || | |||    | |   |||||||||| ||  | |||||||||||||||||  || || |||||| ||| ||||||||| |||||||||  |  ||     |||  | || | |   ||||| |||| ||||||  |      ||||||||||||
ATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCAgtaagtatccatttggcgtgtgtatgatgtttaatatagttaattgtaacatcctggtgttcttattctt--gccactgttttcccaggctcccagctttgggtgattc-ggtctggctttctggcctccatggtgacactttcagcacagcatatatttcttgtttgtattaaccattgatgtgttcctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914574|gb|AW396104.1|AW396104
EST:     CCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAA                         GTATAATCTCCTGCACAAAAAATTTCCTGCAACATCAGTCACCGGATCGCC
genomic: CCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtattt ... ttcctttcagGTATAATCTCCTGCACAAAAAATTTCCTGCAACATCAGTCACCGGATCGCC