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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattattgaatgaagttcttcctatttgttcatatattaaatggaatgttgttctgaatctccattttgtttgttaa

Basic information

species Glycine max
transcript GLYMA17G37220.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattattgaat-----gaagt---tcttcctatttgttcatatat-taaatggaatgtt---gttctgaatctccattttgtttgttaa-
 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||     ||| ||     ||| |   | ||||| |||  | || ||| |  ||  || |||   |||   ||| | | |||| ||| | || 
-GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgc-ttttatttttcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017640|gb|CX704382.1|CX704382
EST:     GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
EST: gi|24205537|gb|BU964790.1|BU964790
EST:     GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
EST: gi|58014288|gb|CX701030.1|CX701030
EST:     GAAAGTGNCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
EST: gi|16279081|gb|BI943248.1|BI943248
EST:     GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
EST: gi|20812590|gb|BQ297068.1|BQ297068
EST:     GAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
EST: gi|192308350|gb|FK001336.1|FK001336
EST:     GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA                         GCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT
genomic: GAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattat ... tgtttgttaaGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTT