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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggtatagtattaattaattgatacttcaatgttccattag

Basic information

species Glycine max
transcript GLYMA17G37150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G171354_T04 (Zea mays), 5'ss of exon 1
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggtatagtattaattaattgatacttcaatgttccattag
  |||  | |||||||||  ||||||||||||| |||||   ||| || |||||||| ||||| || ||||||||||||||||||||  | |||||| ||||| || || | |     |   |     ||  ||| |    | |  || | ||     |||||    || ||  |   |  | ||||  ||                                    
TCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttccactgaggcacaagcgacagaacttttt----tcttgataacat-----tgcttaat-gtctaaggtattcttatgtttttag-----------------------------------

upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggtatagtattaattaattgatacttcaatgttccattag
| |    || |||||||| |||||||| ||| | ||||||||||| ||||||  ||| |||||||| ||||||||||| || |||   || || ||| |||||               |  |     || |||||||  || | || |       | |  ||||   || || |   | | | | ||  | |  | | |||                          
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta---------------acttagccgtggtttttat--gcatccattt------ttacactttattgtatagaactaaactgtattaatgtgatctgaatag------------------------

upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 6
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtcaa----ttattt-gatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggta-tagtattaattaattgatacttcaatgttccattag
| | || | ||||||||| || ||||||||||| ||||||| |||||| |||||||| |||||  | ||||||||||| ||||| ||||| |||||  ||||| ||   ||    ||||||  ||||||||    | |       || |   | | |     |  || | | |||| |     |  |||    | | |  ||   | | |||| |  |  ||  || | | ||
ACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATgtaagttaaaagaagttattttaatctgtttagagtatgatctccctgtttgttagaagtgtacactgtgctgttttctttact--tctaacagaagtcataaggagtgattgtttttggaaattttcctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191151|gb|GD989167.1|GD989167
EST:     GGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAAT                         GTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG
genomic: GGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtca ... gttccattagGTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG