Sequence
atgc intronic sequence ATGC exonic sequenceCTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCTCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttatcttgattaaatattacatttatactttctttcgtactcatggatggctattggtggacataaaagccaattagttaaaaatatggtctga...
Basic information
species | Glycine max |
transcript | GLYMA17G34020.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34020.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G10840.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCTCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttatcttgattaaatattacatttatactttctttcgtactcatggatggctattggtggacataaaagccaattagttaaaaatatg-gtctga
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TTGTGATCCTCACACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAAAAGAAGGAGATTATCTTCACATATGACGTCGATTTCCAGgcaagttttttcttaagtaatctgcggtttgtgtcttaaaaaaatttcatgaattcttgttttcaatagtttttctgatttcctcttctgtttctgtccag
upper sequence: GLYMA17G34020.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G25100.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCTCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttat-cttgattaaatattacatttatactttctttcgtactcatggatggctattggtggacataaaagccaattagttaaaaatatggtctga---------
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CTGTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATAAGAAAGAAATTATCTTCACATATGATGTTGACTTTCAGgcaagttcttgtttgactaatcagtttatcaccagatagttttgtcttagtgagatactattg-tgttcctgtt--ctcactgttttgatttttgcgctgatgtcttcag
upper sequence: GLYMA17G34020.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 6
CTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCTCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttatcttgattaaatattacatttatactttctttcgtactcatggatggctattggtggacataaaagccaattagttaaaaatatggtctga----
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CTGTGACCCCCATACAAAACGCACTGTTATTAATTCCAACTCTCCTCAAGAAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgt-aggctgt-tggacatcaaactacaagtaaattatgttgactgcttaccccta-ttgttagtgg-tatgagcatcattatatcatccatgggcacaaagaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193360960|gb|FK323840.1|FK323840EST: AAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAG GAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTGATGAGT
genomic: AAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttat ... ctacattcagGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTGATGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCTCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGATTTCCAGgtgaggttatcttgattaaatattacatttatactttctttcgtactcatggatggctattggtggacataaaagccaattagttaaaaatatggtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg