Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgtataatggcctgttaaacttaccctttttattgtaacgaaatttcttatttgaaatacttttctattttattatag

Basic information

species Glycine max
transcript GLYMA17G32030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgtataatggcctgttaaacttaccctttttattgtaacgaaatt-tctta--tttgaaatacttttctattttattatag
| ||| |||||||||| |||||||| ||||| ||||||||||| ||||   ||||  ||||   |   |  |  ||  | ||   |    |||  | |  | ||  ||||   || | || || | |  ||  |||  ||
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgta---ttat--tttgatgacctgtttcatattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag

upper sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgtataatggcctgttaaacttaccctttttattgt-----aacgaaatttcttat---ttgaaat-----acttttctattttattatag
| ||| ||||||| ||||||||||||||||| ||||||||||||||||   || |||||    |  |  | | |  |||      |||||||||      |    || |||||||   || | ||     ||   |||  |  |||| ||
GAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATGgtattattctgattgcccttttttcttctcgaacac-tgttttttattgctcttaatttcaacttcttatatcttaagatcttatacccctcttctggattacag

upper sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgtataatggcctgttaaac-------ttacccttttta--ttgtaacgaaatttcttatttgaaatacttttctattttattatag------
| ||| ||||||| || |||||||||||||| ||||||||||||||||   || |||||    |  |  | | || |||       | |    | |||  ||   |  ||| ||||||| |   | | | || |||  | ||          
GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATGgtatcattttgattgcccttttttcttcttgaacactattttgattgctcttaacttcagatcaaacttcttatgtcttaaaatcttatatcctgtttggatttcag

upper sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgta-----taatggcctgttaaacttacccttt-ttattgtaacgaaatttcttatttgaaatactttt----ctattttattatag--------------------------------------
||||| ||||||| |||||||||||||||||||||||||| |||||||||||||  | ||  |     |  |   |  ||| || | |   || || |  |  |  |||| |||| | |   |  |||     ||||    ||  ||                                      
GGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATGgtaagcttaaaaattccaactgcttgtattcctttagacatgctgattattttcttggcagaattacttaatggggtttatttgaatgctataccttttcagaaaatcttattacatcttttttttttctttttttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270080|gb|BM886336.1|BM886336
EST:     GGGAAAACTAGTGGTCTTAATAGCTTTGACCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
EST: gi|151409838|gb|EV279646.1|EV279646
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
EST: gi|17022709|gb|BM093743.1|BM093743
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT