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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGgtgcattcacaagcttgaagtgctttacactaacttgaactcaacctttagaatgatacatatgcaactacttcgtttttgttggaaaaatgattatgttttctagaatttttaattcattttagatttggaacattttgtcatgtgcttatttattattttttttcatgtatgcatatag

Basic information

species Glycine max
transcript GLYMA17G20460.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20460.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 5
GTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGgtgcattcacaagcttgaagtgctttacactaacttgaactcaacctttagaatgatacatatgcaactacttcgtttttgttggaaaaatgattatgttttctagaatttttaattcattttagatttggaacattttgtcatgtgcttatttattattttttttcatgtatgcatatag
|||| |||||||| || || |||||||||||  |||| ||||| |||||||||||||| || ||| ||||||| ||||| |||| ||| ||||| || ||||  |   | | | ||    |  ||   | ||   | |     |   |||  || ||   |||  |  |||     |  ||     ||  | |  |     ||                                                                              
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgt--aacaataggattattattattattattattattattattattattattattattattat-tatttaccagagtgatgaaattaatctcagaacacactc------------------------------------------------------------------------------

upper sequence: GLYMA17G20460.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
GTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGgtgcattcacaagcttgaagtgctttacactaacttgaactcaacctttagaatgatacatatgcaactacttcgtttttgt-tggaaaaatgattatgttttctagaatttttaattcattttagatttggaacattttgtcatgtgcttatttattattttttttcatgtatgcatatag
|||| |||||||| || || |||||||||||  |||| ||||| |||||||||||||| || ||| ||||||| ||||| |||| ||| ||||| || ||||  |   | | | ||    |  ||   | ||  ||    | |      ||| ||||  |  |      |   |    |  | |  | ||| ||   | |      |||||    ||    || | ||||| |                                                 
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgt--aacaataggattattattattattatta--ttattattatttaccagagtgatgaaattaatctcagaacacactcatattaacaaaggagagtatc-----gaattgc--atcttgttaaaatttgcag------------------------------------------------