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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCATTTCATCCAACTCTGGAATGGATTTTTGTTGGGGATCGACGAGGTACACTGCTGGTATGGGATGTATCAACTGAGAGACCTAGTATGATTGGAATgtgagtgtaatttacttataatctagttttttcttgtaccacgactgagacttggcttcattgtcagctatgatttcttatttgttactatactgtggtcatttgtaaatatttgagtttaggcttgttaatttggttatatctgatcattttttgttattgaaatttcag

Basic information

species Glycine max
transcript GLYMA17G20310.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 6
TTGCATTTCATCCAACTCTGGAATGGATTTTTGTTGGGGATCGACGAGGTACACTGCTGGTATGGGATGTATCAACTGAGAGACCTAGTATGATTGGAATgtgagtgtaatttacttataatctagttttttcttgtaccacgactgagacttggcttcattgtcagctatgatttcttatttgttactatactgtggtcatttgtaaatatttgagtttaggcttgttaatttggttatatctgatcattttttgttattgaaatttcag
||| |||||||||||| || || ||||| ||| |||| ||| || | || || ||  ||| ||||||||||||||| |||||||| |||||||||||||||| ||| || |||   || | | ||  || |||  ||   |  |   ||||     | | ||||   || |  ||||  || | ||    || | || | |||                                                                    
TTGGATTTCATCCAACCCTAGAGTGGATATTTATTGGTGATAGAGGTGGCACTCTCTTGGCATGGGATGTATCAACGGAGAGACCAAGTATGATTGGAATgtaagtatatttt---tacattatatattgttcaggttgtaaaaacaagaccattttcctttgttt-ctttcttttccaatgtattctattattttgat-attca------------------------------------------------------------------

upper sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 4
TTGCATTTCATCCAACTCTGGAATGGATTTTTGTTGGGGATCGACGAGGTACACTGCTGGTATGGGATGTATCAACTGAGAGACCTAGTATGATTGGAATgtgagtgtaatttacttataatctagttttttcttgtaccacgactgagacttggcttcattgtcagctatgatttcttatttgttactatactg-tggtcatttgtaaatatttgagtttaggcttgttaatttggttatatctgatcattttttgttattgaaatttcag
|||  ||||| || || || || ||||| |||||||| ||| || | ||||| || |||| ||||||||||||||||||||| || ||||||||||| |||| ||| |   |||   |   |  ||  ||      ||  || |  | | | ||| |   ||| |    ||  |||||| | | || |  ||||| | |  | ||                                                                   
TTGGGTTTCACCCGACCCTAGAGTGGATATTTGTTGGTGATAGAGGTGGTACTCTCCTGGCATGGGATGTATCAACTGAGAGGCCAAGTATGATTGGCATgtaagtatc-cttatagagcgttgagagttggaaaatataactatagtgtcatgggtgtgttgcc---cattgtttcttttct-ttccagtactgcttgctactt-------------------------------------------------------------------

upper sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGCATTTCATCCAACTCTGGAATGGATTTTTGTTGGGGATCGACGAGGTACACTGCTGGTATGGGATGTATCAACTGAGAGACCTAGTATGATTGGAATgtgagtgtaatttacttataatctagttttttcttgtaccacgactgagacttggcttcattgtca-gctatgatttcttatttgttactatactgtggtcatttgtaaatatttgagtttaggcttgttaatttggttatatctgatcattttttgttattgaaatttcag
|||| ||||| ||||| || ||||||||||||||||| ||| |  | ||||||||  | |  |||||||| |||||||| ||||||| |||||||||||||| |||    ||   |  |  |  | || | ||   |  || ||    |   |  |||  || ||  ||    |||  || ||  ||  |||| | |||  |  || |                                                                
TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagtcattttcgttgcttttagatttctgtcagctggcatgaaattgctatcccttttttttctcgcagcaattcattcttgtttgttatattttgg--aactgcag---------------------------------------------------------------