Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaagcctgggaggtggacttgagtttgtgccagattgttaagttatgtatgtttgagtgataactcattgctgctttgctctggccctggtgtt...

Basic information

species Glycine max
transcript GLYMA17G17520.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17520.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagg-----gaagcctgggaggtggacttgagtttgtgc-cagattgttaagttatgtatgtttgag-tgataactcattgctgctttgctctggccctggtgtt
|||||||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||||||        |||| |      ||          | ||  |||||| |  | |  |  | |||  || | | ||  |  | ||   |   | |  |  |||    
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctccaagttatagctaaaaatacgattctatgtatttataactatggcag-

upper sequence: GLYMA17G17520.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0129g00270.t01 (Vitis vinifera), 5'ss of exon 6
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaaggg---aagcctgggaggtggacttgagtttgtgccagattgttaagttatgtatgtttgagtgataactcattgctgctttgctctggccctggtgtt
|| ||||| ||||||||||| || || || |||||||| |||||||||||||| ||||||||||||||||| |   ||         ||  ||| |    | |     |    | | ||    |    | | | ||| |   |||    |  |   | ||   |     
ATTTTCCGCAAGGAGCCATTTTTCTACGGGCATGATAATTATGATCAACTGGTTAAAATAGCTAAGgtaagtgttaaatttctctctgtcaactagtagatatcaggaacatctgaattcca-acagcttaattatatcattttgaaagtgagtctttgcagagagc--

upper sequence: GLYMA17G17520.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaag-ggaagcctgggaggtggacttgagtttgtgccag--attgttaagttatg-tatgtttgagtgataactcattgctgctttgctctggccctggtgtt-------------------------------------------
|| || || |||||||||||||||||||||||||| || |||||||| || || || || || |||||    ||||  ||   |  |    |     ||    |||  | || | | |  |  | | | ||| |  |  |||  | |||  || |||  | ||  || |                                            
ATCTTTCGGAAGGAGCCATTCTTTTATGGACATGACAATTATGATCAGCTTGTGAAGATTGCCAAGgtgctcggaaatctc--atttactatcagccttcaatcagtcactgctcattcgtaatttttctgaatcgtttctc-ctcctgtgtttctcaaggccatgtttaaatcttcgttctaaatctaatctttgttgttacctgaaatcag

upper sequence: GLYMA17G17520.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgta-agggaagcctgggaggtggacttgagtttgtgcca--gattgttaagttatgtatgttt-gagtgataactcat--tgctgctttgctctggccctggtgtt------------------------------------
||||| || |||||||||||||||||||| ||||| || ||||||||||| || || || ||||||||  || |     |   |  | || |||  ||   ||       | | |  || | | | ||| |  | | || ||||  | |||  || | |    ||  ||  |                                    
ATATTTCGGAAGGAGCCATTCTTTTATGGGCATGACAATTATGATCAACTTGTGAAGATTGCTAAGgtgcagtggcagttcatacatagatttgccttcaagcagttatatatcactttttatttattttgtataaaaagtcatattactgtctttcgcaacgccaagttgtgttttgagccttatctttgtgggtgtctgataccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734981|gb|BM528497.1|BM528497
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|9564123|gb|BE473632.1|BE473632
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTTGGACAGA
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGA
EST: gi|21887281|gb|BQ740494.1|BQ740494
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|17963627|gb|BM270374.1|BM270374
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|13478623|gb|BG508028.1|BG508028
EST:     ATTCTTTTATGGACATGATAACTATGATCAACTTGGTCAAA-TAACTTAG                         GTACTTGGGACAGAT
genomic: ATTCTTTTATGGACATGATAACTATGATCAACT-GGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGAT
EST: gi|14260055|gb|BG882963.1|BG882963
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|9565463|gb|BE474972.1|BE474972
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAT                         GTACTTGGGACAGA
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGA
EST: gi|254330876|gb|GR842141.1|GR842141
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG