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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGgttaaaaaattttgcctaattagcttacatgcatcctctcattcatttttcattccgttcaaagtgcagtggtaaaatgtgtttataagaaaaataaaacttttttatctcacgattttacatgtatttgattttgatcttcag

Basic information

species Glycine max
transcript GLYMA17G17450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17450.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G006977_T01 (Zea mays), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGgttaaaaaattttgcctaattagcttacatgcatcctctcattcatttttcattccgttcaaagtgcagtggtaaaatgtgtttataagaaaaataaaacttttttatctcacgattttacatgtatttgattttgatcttcag
|| || ||||||||||| || ||||| || || || ||||| ||||| ||||| |||||||||||  |  | ||||||||||| ||||| ||| ||||||||  |     | | |   ||  |  | | ||  |      || |  |  |  ||  |   |   || |   |||   | |||||||   | ||||| |  | |  |   || |  |  | |   |   |||||  |        
GGTCGATCAGTTTACATCAACATTCAGAAGTTTGTGCAGTTTCAGCTCACTGTCAATGTGGTTGCTCTGGTGGTAAACTTCTCCTCAGCTTGCCTGACAGgtacatccgatatcctgtatatgagttcgtg-gtttggaaatcctctactacttgagcgtatcctgaat--gtactttttgtttatttcataaatatatgtctcattgttcgcattcatgctgattgctgattcag--------

upper sequence: GLYMA17G17450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGgttaaaaaattttgcctaattagc--ttacatgcatcctctc-attcatttttcattccgttcaaagtgcagtggtaaaatgtgtttataagaaaaataaaacttttttatctcacgattttacatgtatttgattttgatcttcag
|||||||| ||||||||||| || || |||||||| ||||| |||||||| || ||||| |||||| |  | || |||||||| ||||| ||  | || |||    |  ||| |    | || |  ||  |||  ||      | |||||||  ||||| |        |||   | |      | |  |                                                         
GGACGTTCTGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTTACCGTTAATGTTGTTGCACTGGTTGTTAACTTCTCTTCAGCTTGTTTAACCGgt----aggtttagtaagaataccaattcaatgtctcgaaaagaatcattttggattccttgtttgacacagctcttatgataatcttcag--------------------------------------------------------

upper sequence: GLYMA17G17450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGgttaaaaaattttgcctaattagcttacatgcatcctctcattcatttttcattccgttcaaagtgcagtggtaaaatgtgtttataagaaaaataaaacttttttatctcacgatttta-catgtatttgattttgatcttcag
||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||||||||| |||| |||||||| ||||| ||  |||||||| | || |     || |  | |||| | | |||       ||  ||  |  ||  ||  ||          |||| |   | | |        || |  ||||||||  |    ||||  ||   | || |             
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagac----cccatcttgctt-cttccatttcaaagttacttccttgttttgtcaaa----------taaacttcttcttttttctccctacattttttttattccttttttttttcaaacacttcag------------

upper sequence: GLYMA17G17450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGgttaaaaaattttgcctaattagcttacatgcatcctctcattcatttttcattccgttcaaagtgcagtggtaaaatgtgtttataagaaaaataaaacttttttatctcacgatttta-catgtatttgattttgatcttcag
||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||||||||| |||| |||||||| ||||| ||  |||||||| | || |     || |  | |||| | | |||       ||  ||  |  ||  ||  ||          |||| |   | | |        || |  ||||||||  |    ||||  ||   | || |             
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagac----cccatcttgctt-cttccatttcaaagttacttccttgttttgtcaaa----------taaacttcttcttttttctccctacattttttttattccttttttttttcaaacacttaag------------