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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGAGATAGATAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGgtaagagttaagaattaatatgcggattgtcaatgattatagaacttttgttagactctctttttttatctgttcctgctgataagtcactacaaatgcag

Basic information

species Glycine max
transcript GLYMA17G17170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02920.t01 (Vitis vinifera), 5'ss of exon 5
GCATGAGATAGATAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGgtaagagttaagaatta-atatgcggattgtcaatgattatagaacttttgttagactctctttttttatctgttcctgctgataa-gtcactacaaatgcag------
| |||| || || ||||| |||||||| |  || ||||||||||| ||||||||||||||||    |  || || |||    | || | ||  || ||||   | |  ||    |   |   | | | |||| |||    ||   | |||    || ||       
GTATGAAATTGACAAAGTGACTGCTGGACTACGTTTAGATTTGAATCTTGAAAGGGGgtaaggaaaacaaactatataaattgtttcttaagtatgataggtttatgtttcagttagatagatatctttgttactgaatgtatcattacttactattcatcattag

upper sequence: GLYMA17G17170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02930.t01 (Vitis vinifera), 5'ss of exon 6
GCATGAGATAGATAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGgtaagagttaagaatta-atatgcggattgtcaatgattatagaacttttgttagactctctttttttatctgttcctgctgataa-gtcactacaaatgcag------
| |||| || || |||||||||| ||| || || |||||||| || ||||||||||||||||    |  || || |||    | || |  |  || |||| | | |  ||  | |   |   | | | |||| |||    ||   |  ||    || ||       
GTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGGgtaaggaaaacaaactatataaattgtttcttgaatatgataggattatgtttcaattagatagatatctttgttactgaatgtatcatttcttactattcatcatcag