Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagttattagtttattattagtgctgtgaatgacgttagtattgctgtgacttgcatcag

Basic information

species Glycine max
transcript GLYMA17G17160.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagtta--ttagtttattattagtgctgt--gaat-gacgttagtattgctgtga-cttgcatcag
|||  |  |||| ||||| ||  ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   ||||||         |  ||||| || |   ||  || ||  || |||| |  |||| ||   ||  ||||   ||| ||||   |||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagttattagtttattattagtgctgtgaatgacgttagtattg-ctgtgacttgcatcag
|||  | ||||| |||||||| |||||||| ||    |||||||| || ||||| |||||||||||||||||||||||||||   |  ||        |||| |    | | | |   | | |  | | ||  || |   ||  ||||||  | ||| || |  |||
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctactaa----ataacatgttgatgtaaaaatgtcaa-attactaagattattgt-ggtattgattatgattt-ctccag

upper sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttaggg-tgcttataaaaccaagttattagtttattattagtgct-gtgaatgacgttagtattgctgtgacttgcatcag
||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||| |   | |  | ||||  |       | | |||| | |  |   |    | ||   |||  ||   ||| | |||| ||||  |||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag

upper sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagttattagtttattattagtgctgtgaatgacgttagtattgctgtg-acttgcatcag-------
 |||||  |||  |||||| |  || || | || || || ||| | |||||||||||||||||||||||||||   ||       ||     ||   ||| |    |||  |  | | | || ||     |   | |  | |    ||      | || |||   ||       
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtg--tgccacgctttcccttgttgatatgatgttaaggcaacaatct-ttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc