1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTGGTTTTGGACGTAGGGACCATTGCTGAGGGTGCAGCACTCTTGCATGAAGAGGGGGCTAGGGAAGTGTATGCATGCTGCACTCATGCTGTTTTCAGgtattgccttgggtctactcccaactatgaagcatgttattttttctaagtatgatgtcagtcaataactgtggtttataataatcctgattttttaagt...
species | Glycine max |
transcript | GLYMA17G16400.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGCACTCATGCTATTTTCAG TCCTCCAGCAATTGAGAGGTTGTCCAGTGGCTTGTTTCACGAGGTGATTATEST: gi|26045611|gb|CA783146.1|CA783146
genomic: CTGCACTCATGCTGTTTTCAGgtattgcctt ... acactcacagTCCTCCAGCAATTGAGAGGTTGTCCAGTGGCTTGTTTCACGAGGTGATTAT
EST: GAAGAGGGGGCTAGGGAAGTGTATGCATGCTGCACTCATGCTGTTTTCAG TCCTCCAGCAATTGAGAGGTTGTCCAGTGGCTTGTTTCACGAGGTGATTAT
genomic: GAAGAGGGGGCTAGGGAAGTGTATGCATGCTGCACTCATGCTGTTTTCAGgtattgcctt ... acactcacagTCCTCCAGCAATTGAGAGGTTGTCCAGTGGCTTGTTTCACGAGGTGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGTTTTGGACGTAGGGACCATTGCTGAGGGTGCAGCACTCTTGCATGAAGAGGGGGCTAGGGAAGTGTATGCATGCTGCACTCATGCTGTTTTCAGgtattgccttgggtctactcccaactatgaagcatgttattttttctaagtatgatgtcagtcaataactgtggtttataataatcctgattttttaagt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT