1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttatttcttgagtatcacttcttttaaaatatgcagtgtcaacaaatttgtttatagtttgctattgtatttttctagtccaaggaagtgaagg...
species | Glycine max |
transcript | GLYMA17G15990.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAATCGGATGATGAATGAGACAGATCAAGCCATTG-AAGGGGAAAGAAG GTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGEST: gi|193654451|gb|FK596571.1|FK596571
genomic: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttat ... gcattaatagGTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAG
EST: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAG GTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGEST: gi|192306338|gb|FG996896.1|FG996896
genomic: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttat ... gcattaatagGTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAG
EST: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGG-AAAGAAG -TAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGEST: gi|151412161|gb|EV281973.1|EV281973
genomic: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttat ... gcattaatagGTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAG
EST: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAG GTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAG
genomic: GAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttat ... gcattaatagGTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGgttggtttatttcttgagtatcacttcttttaaaatatgcagtgtcaacaaatttgtttatagtttgctattgtatttttctagtccaaggaagtgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG