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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttctttttgcctacctgcgattatttgttgttttggaattgcactatacataatacgaagagcagttcctggttgataggggagttattaggaa...

Basic information

species Glycine max
transcript GLYMA17G13440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 5'ss of exon 7
TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttctttttgcctacctgcgattatttgttgttttggaattgc--actatacataatacgaagagcagttcctggttgataggggagttattaggaa
| |||||||||||||||||||||||||| ||||| || || ||||| || ||  |||| ||  |||| ||||| ||  |||| || |||||||||  | ||            ||| | | | |||    ||    | ||  |||||  | | | |  |  | | ||  | ||   |   |  |          
TTATGCATGACTTGCGCATGATTCATACGGACCTTAAACCAGAAAATATTCTGTTAGTCTCCTCAGACTATGTGAAGATTCCCGAGTACAAGgtatatctc---------gaatgcaactgtgtgtgaccttaatgtggccaactattta-agtgctgaaggaatttggttgtgtttcctgatgcag-------

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttctttttgcctacctgcg-attatttgttgttttggaattgc---actatacataatacgaagagcagttcctggttgataggggagttattaggaa---------
| |||||||| || ||| | || ||||| ||  |||||||||| || ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||     | ||  ||   || | ||||  ||   | | ||  ||||   | ||| | |  | |    |  |   ||| |||  |     |  |||| |            
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatat-ggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208219792|gb|GE018916.1|GE018916
EST:     AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|193509579|gb|FK468373.1|FK468373
EST:     AAAACATACTAATAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCACCAAGTTCCTATT-CAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|193315306|gb|FK278908.1|FK278908
EST:     AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAAGAATAACACCAAGTTCCTATTTC
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTA-GA-T--CACCAAGTTCCTATTTC
EST: gi|15813777|gb|BI786052.1|BI786052
EST:     AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|9986568|gb|BE660676.1|BE660676
EST:     AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTNCTGACTACCAG                         AGTTCATCTAGATCACC
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTAGATCACC
EST: gi|193594938|gb|FK546797.1|FK546797
EST:     AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttct ... atttttacagAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT