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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttctgttcttgtattctaatccactgcagtccttgttttgttgttaaccaaaggactgtcctttgattgtttgcag

Basic information

species Glycine max
transcript GLYMA17G12940.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g05130.1 (Oryza sativa), 5'ss of exon 6
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttctgttcttgtattctaatccactgcagtccttgttttgttgttaaccaaaggactgtcctttgattgtttgcag-------------------------------------------------------------------------------------------------
 | | ||||||||| || ||| |||| |||||||| |||||||||||||| ||||  ||||| || ||||||  ||  | ||| | |  ||||  | |          | | |     | |   ||  || ||||   |  |  || | |                                                                                                  
CCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAACAATGTGAAGTATATTGGTTGGATACTTGAGgtaacttctttttccttttctctatccgaacatg----ctatctctagatcagaaaagagagtgtctgatcgtaattagtaacctagttcctagtcatatgccaagctgtaaaaacacttgcactgtatattcaaaagctattcaaatttctgagtacgttttgtttttttttcctcag

upper sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G406603_T02 (Zea mays), 5'ss of exon 6
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct--gttcttgtattctaatc--cactgcagtccttgttt---tgttgttaaccaaaggactgtcctttg-attgtttgcag----------
 || | |||  |||||| ||||| |||||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   | |  | |||||  ||   | ||  |     |  |||||   |  | |   ||               
CCTCGTTGGGCTGATCTTGATATAAATCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttcttactgatgatatgcaaatcattattctactccttacttcagtatttcttgtttagagactgaaataggtaaccttcatgaccagctaatt

upper sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 13
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct--gttcttgtattctaatcc--actgcagtccttgtttt------gttgttaaccaaaggactgtcctttgattgtttgcag--------
 || | |||  |||||| ||||| || ||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   | |  | || |   ||        ||  | |   |  || ||   |  |       |||         
CCTCGTTGGGCTGATCTTGATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttctttatgatgatatgcaaatctttattatactcttcacttcttcagcatttcttatttagagattgaaataggtaatccagcacattcatga

upper sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g04480.t01 (Vitis vinifera), 5'ss of exon 6
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtat-ttttctgttcttg-----tattctaatccac---tgc--agtccttgttttgtt--gtt--aaccaaaggactgtcctttgattgtttgcag---
 |||| ||||||||| ||||| ||||||||||||| |||||||| |||||||| |  ||||| || ||||||  |||| ||  |  |     |||| | ||  ||   |||  |  || || ||      |||  | | | || | ||   |   | ||  ||      
CCTAGATGGAGTGATTTAGATGTCAATCAGCATGTTAACAATGTTAAGTACATCGGTTGGATCCTTGAGgtaggttttgtggccaagcaaattatttttatttacaagtgctaaacccctgcttcacccagttggagcaagagaaatggattggaaatgcctggtatct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323468|gb|FK017454.1|FK017454
EST:     GCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAG                         AGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA
genomic: GCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct ... ttgtttgcagAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA
EST: gi|13789915|gb|BG652506.1|BG652506
EST:     ATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAG                         AGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA
genomic: ATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct ... ttgtttgcagAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA
EST: gi|192322895|gb|FK014826.1|FK014826
EST:     ATATCAATCAGCGTGTCAACAATGTGAAGTACATTGACTGGATTCTGGAG                         AGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA
genomic: ATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct ... ttgtttgcagAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTA