Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAGgtatacttttggataaactgctgcattcagtgccattctttctgctgtttctcctaaggaccttatgatgtctgattaactctttgacacattaaag

Basic information

species Glycine max
transcript GLYMA17G09970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 6
TGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAGgtatacttttggataaactgctgcattcagtgccattctttctgctgtttctcctaaggaccttatgatgtctgattaactctt-tgacacattaaag---------
||||||||||||||||||||||||||||||||||||||| || |||||  | ||||||||||| ||||||   ||||| |||||||| ||||| |||||||| |   | |       ||    |  ||  |  |   |   |  |    |  |  |   ||       |||     || ||||  || ||   | ||          
TGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTAGACAAACTCTTACATTCAATGCCCCAATCAGAAGATGAGCAACTTGTTGTGGTTTCTCAGgtctctctct-------ctctctctctctctctctccccccccaccaccttacacacacacacacatgtgtacatgtagctctgatgtcatggtgaatgtattgtgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22539997|gb|BU089840.1|BU089840
EST:     TGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAG                         GTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCAG
genomic: TGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAGgtatactttt ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCAG
EST: gi|17964168|gb|BM270907.1|BM270907
EST:     TGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAG                         GTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCAG
genomic: TGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAGgtatactttt ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCAG
EST: gi|6481804|gb|AW201075.1|AW201075
EST:     GCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCCAG                         -TGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCA
genomic: GCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTC-AGgtatactttt ... cacattaaagGTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCA