Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAGgtgagcatatttgtttgttatgggctactttttctggtaatttaagacaagtattataatggtttttctattttagtctatgaatatgatccaactccag...

Basic information

species Glycine max
transcript GLYMA17G09940.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09940.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g07960.t01 (Vitis vinifera), 5'ss of exon 7
CCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAGgtgagcatatttgtttgttatgggct--actttttctggtaatttaagacaagtattataatggtttttct--attttagtctatgaatatgatccaactccag
|| || |||||||||||||||||||||||||| || || |||||||||||||||||  | ||||||||| | ||| | | ||||||  | ||||| |||||| |   | |||      |||         |   ||| | |   ||  |||| |   || |    ||  |   |  ||    | ||| |   |  | |      
CCACAGCTCTTGCTTTATCCAAATGCTTCAGACCCACTTAATGGTGATGCAGCATCAATGATGATGAAGAACAAAGATCAATATGAGAAAAAAGTAAAAGgtaaaagtttttcacacatataaatatggatgcatctaggagagtataacaacttgaattagaacttcaccgaaactttccatttgattggaagtctatc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213607656|gb|DB958675.1|DB958675
EST:     AGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAG                         AGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCT
genomic: AGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAGgtgagcatat ... gtggggacagAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCT
EST: gi|213612227|gb|DB976832.1|DB976832
EST:     AGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAG                         AGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCTG
genomic: AGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAGgtgagcatat ... gtggggacagAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCTG