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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGgttattgcaatagtgttcccacttttttattcttttgtttgctatcatttgtaacttatggatatctatatttgtatgttgctggtctttccaaagaaaaaaatattttgtgctctgaatcgacttaagtaaaaatcatttgggtgattattgacgcatgcattttcctgtgggatatcatgatattatag

Basic information

species Glycine max
transcript GLYMA17G09270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGgttattgcaatagtgttcccacttttttattcttttgtttgctatcatttg-taacttatggatatctatatttgtatgttgctggtctttccaaagaaaaaaatattttgtgctctgaatcgacttaagtaaaaatcatttgggtgattattgacgcatgcattttcctgtgggatatcatgatattatag
|| ||||| ||||| |||||| |  | |||||||| ||||||||| | || ||||||||||| || ||||||||||| |   | ||||| ||||||       || |      |  || |||   ||  || | || |  ||   |||  || ||      || ||| ||||||    ||      |||  |     ||||||||                                                                                
ATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCACGAGAGGTTGAAACTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGgtttacttgctatttagtttaacttattaggattgagtatactgttgttgaataaagtagggg-----atgttt-tatgtt----gtgcactgaaaacagttgttattttgtag------------------------------------------------------------------------------

upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 6
ATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGgttattgcaatagtgttcccacttttttattcttttgtttgctatcatttgtaacttatggatatctatatttgtatgttgctggtctttccaaagaaaaaaa--tattttgtgctctgaatcgacttaagtaaaaatcatttgggtgattattgacgcatgcattttcctgtgggatatcatgatattatag
|| ||||||||||| || |||||||  |||||||| |||||||||||||| || |||||||| || ||||||||  | |  || ||||||||||||  ||   |||| | || | |   |   |  |     ||| | ||     ||    || ||   |   |   | || ||     ||||  |||     |    ||||  ||||| || |     |||                                                                
ATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAGGTGGAAACTCTAGCGAGGCAGTTCTTACGTAATCCATACAAGgttcgtgttgtagt-tccctattccatatgttatccagatgcaagca-----aaaccgtgtatgcat---tagatgtgctgtaaagctttagaaaatgtgatgcttattcagtgctttgtaaaatattag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814206|gb|BI786481.1|BI786481
EST:     CAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAG                         GTAATTATTGGGTCACCATACCTGAAGGCAAATCAATCTATAAATCAAATT
genomic: CAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGgttattgcaa ... gatattatagGTAATTATTGGGTCACCATACCTGAAGGCAAATCAATCTATAAATCAAATT