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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagcactttatatttttaagttcaaaatattgtttcttgatatcgcagaatggccttgcaaataaatagctttgaagtttatgtcctaaagtatgatactaagatctctgtctttttcccatgattacag

Basic information

species Glycine max
transcript GLYMA17G08120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 7
GGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagcactttatatttttaagttcaaaatattgtttcttgatatcgcagaatggccttgcaaataaatagctttgaagtttatgtcctaaagtatgatactaagatctctgtctttttcccatgattacag
||| |||||||| |||| ||||||||| || || || || || ||||| || || |||  ||| ||||| || ||||| |||||||||||||||||||||||| |     |    ||  ||   ||  |||||| | ||     | || |   | ||||    | |  |   ||    ||||      |  |  ||||| ||||  | |  || |||                              
GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaagacctgttttgc---tttcattttttattt-----ttttatgcatggataatctatagagttttttt--ataa------tcaatatttatttcctttattggga-act------------------------------