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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGAACAGAAGCTGCTAACGAACAGCTGCGGAAAGAATTGGAGGAGAAAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttattgtccttatatttatgatggttactggcttcttggtttttaacatttgacgataaattgtctccctttgagaagtgctattttttaactaccgaccaaatgcttaatgatcagttatagtaagaatggttttagttgtgacccattttaagctctggactgagttatattttgcttgtgattttggtgcag

Basic information

species Glycine max
transcript GLYMA17G07920.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407436|gb|EV277251.1|EV277251
EST:     AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG                         GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: gi|120495909|gb|EH224076.1|EH224076
EST:     AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG                         GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: gi|51343344|gb|CO984077.1|CO984077
EST:     TCAACTTGAAAAGCAG                         GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
genomic: TCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: gi|120496031|gb|EH224198.1|EH224198
EST:     AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG                         GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT