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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttccaacttttgactatattttcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttggatgaaatt...

Basic information

species Glycine max
transcript GLYMA17G06740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttt-tccaacttttga-ctatattt-tcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttggatgaaatt---------------------------
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| |||  ||||||||||| ||||   | || ||||| || ||||| ||| ||||| |||    | ||| ||| || | |      | | ||| |||||  |||   |  ||||||   |  |  | ||   || | | |    ||   ||                           
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagact---gttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag

upper sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttccaacttttgactatattttcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttggatgaaatt
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| ||| |||||| ||||||||||   | ||||| || || ||||| ||| |||      | | ||       ||| | |  |  || |  |  | |  ||    ||   |  |    |||  | |||    ||||||          
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgttat-----tttacatttggcatgaccgatacgagtttatattttcatgtttttgatgaattgttacgtattttctgcag----

upper sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttccaacttttgactatattttcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttgga-tgaaatt---
|| ||||| ||||||||||| || ||||| |||||||||||||| ||||| ||| | |   | |||||||| |||| |||| | |||||||| || |||||| |||| |  |    |   ||  ||| | ||   ||   | |||   || | ||| | |  |       |||  ||| ||    ||  |||| |  |||    
CCGTGGATTGCATCTGTAGCTGCAGCAATCGATGATCGTAGATACAAAAACCATCTTACTTTGGGAAATGGGAAAATCTTACCTGGAATTGGTTTGTCACgtaagttctata----taacctgaattatgttggaattctactgtttaggttggccttgggaaacaatatgattcaatctgctgaatactggagttcaatcaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815420|gb|BI787695.1|BI787695
EST:     TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC                         CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
EST: gi|193641520|gb|FK589042.1|FK589042
EST:     TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC                         CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
EST: gi|208296352|gb|GE093974.1|GE093974
EST:     TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC                         CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT