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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag

Basic information

species Glycine max
transcript GLYMA17G05410.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaat-atatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
||| ||||| || ||| | |  || || ||  || | || || ||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||        |||||||| | ||  || || |  || || ||  |||  |  |    | | ||  |  | |   | |    | | | | |||||| |   |    ||                                                                      
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgt------gcttttctttccttcgtatcatctagctttaatg-tttgattcatcattaaagttggggctacatatatctttg-tcgatattattgtgtggcctcggtc---------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 7
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtatt-ggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
|||||||||||| ||| | | ||| || ||  || | || || || || ||||| |||||||| ||||||||||| || || |||||||| |||||||||||  ||     || | ||||||   ||  ||   |  ||   |||||   | |  | | | ||  |   | ||    |  |  |     | |||  |     |                                                                          
TTGTCTTCCTAAATGTGTGAGAATATTGGAGAGGTTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTACTATGGAATTCCATCTCCTTGGCTTCAGgtacgta---cttccctttcatgtcat-catccattcatccagcttgatctatcagtaaaattaggctagatatgtatttaattactggtcattaggccgttac-------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgg-gttttaggaagatttttgaatgctactctt---acagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
||||||||| || ||| | | ||| || ||  |  | || || || || ||||| |||||||| |||||||| || || || |||||||| |||||||||||   |     |||| |  ||| |   ||    |    ||   ||     |  ||  ||   |||   |  || || |    | | |  ||| |||| ||                                                                                
TTGTCTTCCAAAATGTGTAAGAATATTGGAGAGATTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTATTATGGAATTCCATCTCCTTGGCTTCAGgtacttc--cctttcatgccattatccattcaaccagcttcatttattagtaaagttaggcctttacttagtagtcattaggctgttaccttctattaagct------------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttg--cttttattgagaaccaaaagtgttgaactaaattttttctta---tccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||||||| | || || || ||||| ||||| || ||||||||||| ||||| ||||||||      | |    ||    ||||  || |  ||||        |||||   | ||  ||        ||| | ||  ||   | |||  || |||   |   | |  || || |   || |      |   | | |||    || ||   |  |||   || ||||   | |  ||
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttg------tcttaactcggttaatacgtt-caatatt--------ttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggc-agtacag

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttg--tgaatt-------tttcttttcatcaaatatatt------tctgtattggcttgggttttaggaa------gatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttag-tgtttaacaatttttgcttaatgtag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||| | || || || ||||| ||||| || ||||||||||| ||||| ||||||||  | || |       ||   | |  |  ||||  ||      ||| || | || |   ||| |  ||      |  |||| ||   |     |  |  | |||| |    | |       |        |   | | || || |    ||  | ||  | |  | | |  |||   || |||| ||| |  ||
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
|||||| || |||||| | || ||| | ||  ||||||||||||| |||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||  |     ||||| | |  || ||  ||  | |    |||| |  |  || |   |   | | |      | |     | ||| || ||  |||                                                                           
TTGTCTCCCAAAGTGTGTTAAGATTCTGGAGAGGCTTGCTAGGAATCAGGATGTTCCACAAGAATACACTTACTATGGTATCCCAACTCCCTGGCTTCAGgtttgtg--tgcccattttctttactta-atccctaaagtaatatgggctgaaaaaaaaaaataacaagatgaaaaaataaaaaacctttgttcag--ccaggca-----------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S507_6V6.1 (Physcomitrella patens), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttctt--ttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
|||| | || || ||| |    ||  ||||||| ||  | |||   || ||||| |||||||||||||||||||| || ||||| ||||| ||| | |||||    || || || ||  ||  |||  || | || |||    || |    ||  |||     |||| ||| |    || ||| | |||  |  ||   |     |                                                                        
TTGTGTACCAAAATGTGTACGGATCCTAGAACGCCTGACCAGGGGTCAAGATATTCCACAAGAATACACTTACTATGGCATCCCCTCTCCTTGGTTGCAGgt----gatttcttattcatttgtcagttagaattatgtt---gcatataattgtggagctgctttgtatgttgactttccaggtagctaatcatgttgatggggaa-----------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ34224 (Selaginella moellendorffii), 5'ss of exon 6
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag
 ||  || | || ||  |     || | || ||  |  | |||| ||| ||||| || || || ||||| ||||||||||| |||||||| ||||| |||||||||         ||||| || |   | ||| ||    || |  |  ||| |||| |   |   ||  ||||||| | | ||  |  | ||||| |                                                                              
CTGCGTTTCAAAATGCGTTCGTGTTCTGGAGCGCTTAACCAGGAGCCAAGATATTCCTCAGGAGTACACATACTACGGTATTCCATCTCCTTGGCTCCAGgtttgt---------ttttcgtcga---tgtttttgc---ggtt--gactttgggaacaccat---at-ttactctttctgtttagtgat-ttgagcag-----------------------------------------------------------------------------