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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcctatctatgaacttgggatttgaaattttcgttttccgtttttgtccccctcaaattcaaccttgactaaattttggaactatgcag

Basic information

species Glycine max
transcript GLYMA17G05130.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05130.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G05450.1 (Arabidopsis thaliana), 5'ss of exon 7
GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcctatctatgaacttgggatttgaaattttcgttttccgtttttgtccccctcaaattcaaccttgactaaattttggaacta----tgcag
||    ||| | || |||||| | ||||| ||||| ||||| || ||||| ||| | ||||| |||||||||||||| ||||||| |  | |     ||        | |     ||     |   ||   |  |||   | | ||    ||  |    ||  ||   | || |    | |||
GATACTGAATACTATAACAAACTTGAAGAACCAACAGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAACgtaaagtcctctcttactcttaaagcaaacacaaaacaagaagtctaat--tgtttactttaatgagaaagtatcatatgttcccggacaaatgtttcag

upper sequence: GLYMA17G05130.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcctat-ctatgaacttgggatttgaaattttcgttttccgtttttgtccccctcaaattcaaccttgactaaattttggaactatgcag
||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || |    | | |||||| ||  |     |||| |   |     ||            ||| | ||    |    | ||||||  || |||||
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaac---gaattcttactcaatattca----------aaactaaatggagttctatttttggggctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231340|gb|BE800228.1|BE800228
EST:     CTGATGAGGAAAATGACATGTTGGATCTAGCNTTTTGG-CTCACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
genomic: CTGATGAGGAAAATGACATGTTGGATCTAGC-TTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
EST: gi|192322757|gb|FK014448.1|FK014448
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
EST: gi|254345030|gb|GR855687.1|GR855687
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
EST: gi|6070770|gb|AW100157.1|AW100157
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCTGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCG
EST: gi|298179386|gb|HO027857.1|HO027857
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATT
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATT
EST: gi|14259415|gb|BG882323.1|BG882323
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC                         ATCACGTCTGGGTTGCCAA
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAA