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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGgtacaaagttttcgaacccttttggatgcacatattctgctgagtgctgatcgtcatttcaactaggtcaaatgattacaaaagacatttgcattgagatgttgcaaaataagttgatcatcattattttaaaagactaaaaggtaaataaactcattttctttctttctatgctccttgtag

Basic information

species Glycine max
transcript GLYMA17G03920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G139894_T01 (Zea mays), 5'ss of exon 7
AATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGgtacaaagttttcgaacccttttggatgcacatattctgctgagtgctgatcgtcatttcaactaggtcaaatgattacaaaagacatttgcattgagatgtt-gcaaaataagttgatcatcattattttaaaagactaaaaggtaaataaactcattttctttctttctatgctccttgtag
 ||  |||| ||||| || || || || ||  | ||||||||||| ||||| || ||||| |||||||| ||||| || ||||| |||||| | || |||| |       ||  |  | ||||     ||  || | || | | ||||    || || || |    ||    ||  |            || ||||  ||  | | ||||| | ||| |  |    || |||| |  ||  ||  |   |  |  ||                           
TATCCTGGGCCCTTTCTTCCAAAACTCCTACACTGAGGTGAAAGTTGGATCATGCCCTGAATGTCAATCCAAAGGGCCATTCACAGTCAATGTCGAGCAGgcatgttaccttaaacacgtttt---caca-gtactgtgtt-attgcta--tgtgatatcgatatagttttctgtatgtggg------ctgtattgttatcctagtaaaattaattgtttcttccaatcttaata--cttgaacttttttccatgcag--------------------------

upper sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 5
AATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGgtacaaagttttcgaacccttttggatgcacatattctgctgagtgc-tgatcgtcatttcaactaggtcaaatgattacaaaagacatttgcattgagatgttgcaaaataagttgatcatcattattttaaaagactaaaaggtaaataaactcattttctttctttctatgctccttgtag
| ||||||||||||| || || || || |||||||| || || || || || ||| |||| || || |||||||||||||| ||||| ||| | |||||||||     || |  || |  | |  ||    || |||   | | |    || | ||| |  || |   |  ||||  |  ||  |||  |    || |    || |    |   || |                                                                  
AGTTTTGGGGCCTTTCTTCCAAAACTCTTATTCAGAAGTCAAGGTCGGTTCTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgta--ggattctgtaatctctct--atcattattttcctttaactctacgaacttcaatgtaagttattggaatg--tgaaattgaccatactgttaa----ttactcccttgtttcag-----------------------------------------------------------------

upper sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 6
AATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGgtacaaagttttcgaacccttttggatgcacatattctgctgagtgctgatcgtcatttcaactaggtcaaatgattacaaaagacatttgcattgagatgttgcaaaataagttgatcatcattattttaaaagactaaaaggtaaataaactcattttctttctttctatgctccttgtag
 ||| ||||||| || || ||||||||||||||||| || || || || || || || || || |||||||||||||| |||||||||||||| || |||||   |||||||  ||    ||||  ||   ||||     |         | || | |  ||| | |  | |   | | | || |  | ||   | || || ||     |  |                                                                      
GATTCTGGGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAGGTTGGGTCTTGCCCAGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGgtg--aagtttttcaa----tttg--tgtttatatctcatt-----tcttttgttactgaaaccaagggacaaactgatagaaaagttgtgtcct-agttgatgtctctttggc---------------------------------------------------------------------