Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaatatgccaaaatgctttttatttaccaagaggtatttctcaaatcagctttttgtttgtcgacag

Basic information

species Glycine max
transcript GLYMA17G03880.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g19690.1 (Oryza sativa), 5'ss of exon 12
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaatatgccaaaatgctttttatttacca-agaggtatttct-caaatcagctttt--tgtttgtcgacag--------------------
 || || |||||||||||| | ||||||||||| || ||||| |||||||||||||| ||  | ||| | ||||||||||| || |  ||||||||  ||||  ||| | ||  |  ||||     | |||| |  | | || | |   |||| |    |||||  |     ||   | ||  |                    
AAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGgt--atgttatccaatgatgcttt--tcctttctcctgaacataaaaacatttttatgcatcagagtgagacgtcaatggaatgcacaaaacatgttcatgcat

upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G135968_T01 (Zea mays), 5'ss of exon 12
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctct----caatatgccaaaatgctttttatttaccaag---aggtatttctcaaatcagctttttgtttgtcgacag--------------
 || |  || ||||| ||||| |||||||| || |||||||| |||||||||||||| ||  | || || ||||||||||| || |  ||||| ||  |||| |||| | ||     |||| |    |  |   |  ||| ||| | |   ||| |     | |   || |   || |    |                  
AAGACATGTAGTGAACTGGCTGTGGGCTGCAGGCTGTCATCCGTTTGGACCATTCTCGAACTCCTCACAGATCAGTCAAATTCTTCAGGATGTAGCACTGgt-aatgttatcaacaacaatttttttatttctatgatatgtacaatgagtaggcagggagcgagggaggtcaatgctcaatgctcctatgtcgaagtgca

upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 12
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaat-atgccaaaatgctttttatttaccaagag------gtatttctcaaatcagctttttgtttgtcgacag
 || ||  |    |||||||||||||| || |||||||| || |||||||||||||| ||    || |  |||||||||||||| | |||||||||  |||||| | |  ||  ||| ||  |  |||      ||   |  || |       | || |    |   |   | || | | |   |||
AAGACCTATCACCAATTGGCTTTGGGCAGCCGGTTGTCACCCGTTTGGACCATTCTCAAACGTCTCCCTGATCAGTCAAATGCTTCAAGATGTTGCACTGgtgagtccaatcataatgatttctgaatagaaactagc-attaaaatccttctgaatcttgtgagatatgatattttatatttgcag

upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0077g00820.t01 (Vitis vinifera), 5'ss of exon 12
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaatatgc-caaaatgctttttatt--taccaagaggtatttctcaaatcagctt--tttgtttgtcgacag---------------
 || ||  | ||||||||||| ||| | |||||||||||||| |||||||||||||| ||||| || || ||||||||||||||||  |||||||| ||||| | | |  |     | |   |  ||| ||   ||    ||  || |   ||     |  | |||||  ||    |  | | ||               
AAGACCGATCGTGAATTGGCTCTGGTCAGCTGGTTGTCATCCGTTTGGACCATTCTCCAATACTTCCCAGATCAGTCAAATGCTCCAGGATGTTGCCTTGgtaattccaatgatgttctttgcttaattctgcataaaaatattaaaaatgataatcaaggttagcttcattaaggtagcaaaagtcacaacttaaaagc

upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0077g00200.t01 (Vitis vinifera), 5'ss of exon 6
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaatatgc-caaaatgctttttatt--taccaagaggtatttctcaaatcagctt--tttgtttgtcgacag---------------
 || ||  | ||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||| || || || |||||||||||||  |||||||| ||||| | | |  |  |  | |   |  ||| ||   ||    ||  || |   ||     |  | |||||  ||    |  | | ||               
AAGACCGATCGTGAATTGGCTCTGGTCTGTTGGTTGTCATCCATTTGGACCATTCTCCAATACTTCCCAGATGAGTCAAATGCTCCAGGATGTTGCCTTGgtaattccaatgacgttctttgcttaattctgcataaaaatattaaaaatgataatcaaggttagcttcattaaggtagcaaaagtcacaacttaaaagc

upper sequence: GLYMA17G03880.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0077g00250.t01 (Vitis vinifera), 5'ss of exon 7
GAGGCCCGTTGTGAATTGGCTTTGGGCTGCTGGTTGTCATCCATTTGGACCATTCTCTAATACATCTCACATCAGTCAAATGCTCCTAGATGTTGCTTTGgtgaatgctctctcaatatgc-caaaatgctttttatt--taccaagaggtatttctcaaatcagctt--tttgtttgtcgacag---------------
 ||  |  | ||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || || || |||||||||||||  |||||||| ||||| | | |  |     | |   |  ||| ||   ||    ||  || |   ||     |  | |||||  ||    |  | | ||               
AAGATCGATCGTGAATTGGCTCTGGTCAGCTGGTTGTCATCCATTTGGACCATTCTCCAATACTTCCCAGATGAGTCAAATGCTCCAGGATGTTGCCTTGgtaattccaatgatgttcttttcttaattctgcataaaaatattaaaaatgataatcaaggttagcttcattaaggtagcaaaagtcacaacttaaaagc