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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaacatcttgtaatttcttgatataattttagttggctactatgacatgctacacagtcctcatgtttgttgtatag

Basic information

species Glycine max
transcript GLYMA17G03560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgt-aacaacatcttgtaa------tttcttgatataattttagttggctactatgac-atgctacacagtcctcatgtttgttgtatag
 || |||||||| |||||||||||||||   || || || ||||| |||||||| || || |||||||| |||||||| ||||| |||||||||| |||||| ||| | | ||| ||       |||||| |||               |  ||  | ||| || | | |  | ||| || || | |||
GCTAATGCCTGGTTTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTCCTTATCAACCCTCGGAATATAGACTATCACACTGGTGTTTTTGCAAGCAAGgttaactagaccttctaccttagctttcttcataccgcagacacatttcatcatctctatgttaaa-attgttgatgattttt-tctag

upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaa-------catcttgtaatttct---tgatataattttagttggctactatgacatgctacacagtcctcatgtttgttgtatag
  | |||||||| ||||||||||| |||   || ||||| || ||| | ||||| ||||| || || ||||||||||||||||| || ||||| | |||||| ||         || ||     |||||   | |||| |  |   ||| | |||||   |  ||   ||     ||| | | | |     
GTTGATGCCTGGTTTTGATCCTGAGATTGCAAAATTGGCCCAAAGGATTCTTATCAATCCTCGTAAAATTGACTATCATACTGGGGTCTTTGCGAGCAAGgttaccttgagattcaactcaagctttctccataatatgaaatcttttgac-actattgtaacct-tgcaacatccatatctctag-----

upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaacatcttgtaatttcttgatataattttagttggctactatgacat-gctacacagtcctcatgtt---tgttgtatag------------
 || ||||||||||||||||||||||||   || || || ||||| || ||||| ||||| ||||| ||||||||||| ||||| |||||||||| ||||||       |  | ||  ||| | | |  |||  ||     |  | |||||| | |  | | ||   |||||   || | ||| |            
GCTGATGCCTGGATTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTTCTTATCAATCCTCGGAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgttcacctttgctctagcttcctcaaagtattccagacttttttt-tgacatagttgaataatctgtatgttgaatggtctattgatttttcaccag

upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 5
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaa---------caac---atcttgtaatttcttgatataattttagttggctactatgac-atgctacacagtcctcatgtttgttgtatag
| | |||||||| |||||||| || |||   || ||||| |||||| | ||||| | ||| || || ||||||||||| ||||| |||||||||| ||||||||         ||||   ||||| | | |  |   ||   ||  ||   | |  ||| |  || |  || |||  |||||| | | |     
ATTAATGCCTGGGTTTGATCCCGAGATTGCAAAATTGGCGCAGAGGATTCTTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaagctcaactcaatctttttaatgatgtgtaatcttccagcatgattgtataattatacctcaaagtattcatgtctctag-----

upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaacatcttgtaatttcttg-atataattttagttggctactatgacatgctacacagtcctcatgtttgttgtatag----------------
 || |||||||||||||||||||| || || ||| | |||||||||||  | ||||||||  | || |||||||||||||||||||| ||||||| ||| || |     |  | | ||   ||| | ||| |  |  |      ||||    ||   |   ||  |||| | |      ||                 
GCTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTAGCTCAGAGGGTTTTGATAAATCCAAGAAAGATTGACTATCATACTGGAGTCTTTGCAAGCAAAgtgagcctgttatatcatgcattgcaaatactgcttctctttctctatacagtgtgtccatgtattcatctgttaaacttaaatctattcttattcag

upper sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaacatcttgtaatttcttg-atataattttagttggctac--tatgacatg---ctacacagtcctcatgtt-----tgttgtatag
||| |||||||||||||||||||| || || ||| ||||||| ||||| || |||||| |  | || |||||||| ||||||||||| ||||||| ||| ||||      ||| |  | || || || | |  |||| |  || |  ||     ||    |||  | |  |  ||||     |  | || ||
ACTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTACCATACTGGAGTATTTGCAAGCAAAgtaa----gcctttttgtctcatgcattttaaattagatatcttccttacacagtgggtttacgaattttttttgttaacgcttctttacag