Sequence
atgc intronic sequence ATGC exonic sequenceCTTTATGTGAATTTGCGGGAGGTGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAgtatgcaccataatctttccatctgaaactcttggtctacatacttatcttttagagacagcaatttcaatttatgaagaaaagacccttactcgttaaaaacaattggaatcttctgtgcag
Basic information
species | Glycine max |
transcript | GLYMA17G01390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G01390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 11
CTTTATGTGAATTTGCGGGAGGTGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAgtatgcaccataatctttccatctgaaactcttggtctacatacttatcttttagagacagcaatttcaatttatgaagaaaagacccttactcgttaaaaacaattggaatcttctgtgcag
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CTTTGTGTGATTTTGGTGGGGGAGAAGAAGAGAGGCAAGAGTTGGAAGCATATCGTGAAATACATTTCCCTGCGCTGGCCCTTCTTAAGAAGACTACAAAgtaggcatcgtatttttt---ttttaaatttttgggttcttcattt------------catctgcttcacttttttgggcattaac---tgcatgcttagggc--tcg--attttatgctga-
upper sequence: GLYMA17G01390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s2006g00010.t01 (Vitis vinifera), 5'ss of exon 1
CTTTATGTGAATTTGCGGGAGGTGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAgtatgcaccataatctttccatctgaaactcttggtctacatacttatcttttagagacagcaatttcaatttatgaagaaaagacccttactcgttaaaaacaattggaatcttctgtgcag
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CTTTGTGTGATTTTGGTGGGGGAGAAGAAGAGAGGCAAGAGTTGGAAGCATTTCGTGAAATACATTTCCCTGCGCTGGCCCTTCTTAAGAAGACTACAAAgtaggcatcgtatttttt---tttttaatttttgggttcttcattt------------catctgcttcacttttttgggcattaac---tgcatgcttagggc--tcg--attttatgctga-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7590572|gb|AW706321.1|AW706321EST: TATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAA ATTACCTTCTCCTTCTGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACC
genomic: TATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAgtatgcacca ... ttctgtgcagATTACCTTCTCCTTCTGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTATGTGAATTTGCGGGAGGTGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAgtatgcaccataatctttccatctgaaactcttggtctacatacttatcttttagagacagcaatttcaatttatgaagaaaagacccttactcgttaaaaacaattggaatcttctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA