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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGgtacatgcgtcttgttatttttttcctcaattattattggatgattatttccttttttttttctaggttttggttttatggttgggggaataatgctgta...

Basic information

species Glycine max
transcript GLYMA17G00490.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 10
TGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGgtacatgcgtcttgttatttttttcctcaattattattggatgattatttccttttttttttctaggttttggttttatggttggg-ggaataatgctgta-----------------------------------
                               || ||||||||||||||||||||||| || || ||| ||||||| ||||  ||||||  ||| || |     | ||| | |||     |  |      |  |   ||||||   |   |   || |  |   ||    |    | ||||||      | |  ||     |                                   
------------------------------TCTCAATCTTATTGGAGGAGATACTTTATTCGGCCGCTTATGGGGATGTCTCCCACGAGCTTATTATCCTA-GCTTGCATTTTGAAGCATGCTATT---ACCAGgtttggat--ctgactttgttctcatcagtaaagctgaactctatggtccaccaggaccatttaaaatgagaaatattagctggtaacttttttttttttga