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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttttgtgtcccccctgtgggttcattgttttaaatgtttcctaaattaggattgtgattatagcctataatcattgcaaaattagttatgatgaatcttctctcagaattttaaaaaaattatgacacccagagttgagatctttttgaatccactttttatcttgcag

Basic information

species Glycine max
transcript GLYMA17G00470.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00470.4 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 7
AATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttttgtgtcccccctgtgggttcattgttttaaatgtttcctaaattaggattgtgattatagcctataatcattgcaaaattagttatgatgaatcttctctcagaattttaaaaaaattatgacacccagagttgagatctttttgaatccactttttatcttgcag
||||| |||||||| || || ||||||  |||||| |||||||| ||||| |||||||||||||| || || ||||| ||| | |||||||| || ||||||||   | ||   |   |  | |   || ||      |||||       || |  | || ||  |  |  |     |  |        ||   ||||| ||||                                                                        
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatctctctttctttttcttttt--ttttataaaaaaaaatgacaaaagaaatctg-ttatggatgcaagcctcttttctcatgcttctataaatgat-aatc------------------------------------------------------------------------

upper sequence: GLYMA17G00470.4 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01120.t01 (Vitis vinifera), 5'ss of exon 3
AATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttttgtgtcccccctgtgggttcattgttttaaatgtttcctaaattaggattgtgattatagcctataatcattgcaaaattagttatgatgaatcttctctcagaattttaaaaaaattatgacacccagagttgagatctttttgaatccactttttatcttgcag
||||| |||||||| || || ||||||  |||||| |||||||| ||||| |||||||||||||| || || ||||| ||| | |||||||| || ||||||||          || | | |     ||| ||  |||     |||  ||||  |  ||    |    |  || | ||   |||||   |             ||| |||||   || || |||   |                                                
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatc---------tctctctttctttttcttttcttt-----ttttataaaa-aaaatgaaaaaagaaatctgttatggatgcaagcct-------------cttttctcatgcttctataaatgat------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048878|gb|CA785331.1|CA785331
EST:     AAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAG                         GATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT
genomic: AAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttt ... tatcttgcagGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT
EST: gi|22524995|gb|BU083806.1|BU083806
EST:     AAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAG                         GATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT
genomic: AAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttt ... tatcttgcagGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT
EST: gi|23729351|gb|BU762759.1|BU762759
EST:     CCAACTTCAGGGAGGTTGCTATCAAAG                         GATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT
genomic: CCAACTTCAGGGAGGTTGCTATCAAAGgtattgtttt ... tatcttgcagGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATT