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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGGCACTAGTTAGTCATGTTGCTGTTTGGGGATCTATAATCATTACATATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGGgttagtcatgtgtgatgtgtgtcttcctatgaatatattgtattgtagattagtagtgtaggatatatagcttatgtgcctctaatcatttcag

Basic information

species Glycine max
transcript GLYMA16G34610.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 6
AATGGGCACTAGTTAGTCATGTTGCTGTTTGGGGATCTATAATCATTACATATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGGgttagtcatgt--------gtgatgtgtgtcttcctatgaatatattgtattgtagattagtagtgtaggatatatagcttatgtgcctctaatcatttcag----------
 ||||  | |  ||| ||||||||| || |||||||| || ||||||||||||| |||  || |   | |||||||||||||| |||| || |||||||||||||||   |        || ||   | | || |  |  |  | || |  | ||  ||  |  | |  | | ||||    ||||  ||| |||  ||||            
GATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttata----atgtaactccaatattttctatgtttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667555|gb|AW279006.1|AW279006
EST:     TATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGG                         GACTATATATCATTTGGCAAGGTCCCCTACATATTGGATGACAATTGTGCT
genomic: TATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGGgttagtcatg ... atcatttcagGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATGACAATTTTGCT
EST: gi|10255061|gb|BE822827.1|BE822827
EST:     TATGGTTGCATGGTGATATTNNATTCTATANNNGTCTTTCCGAATTACGG                         GACTATTTATCATTTGGCAAGGTCCNNNACATATTGGATGACAATTTTGCT
genomic: TATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGGgttagtcatg ... atcatttcagGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATGACAATTTTGCT