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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattttatttttaatttgaggagtgttaagaacacattctataacatagtccttcaaatacactcactaattggttaaatttattaaaaattata...

Basic information

species Glycine max
transcript GLYMA16G34510.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattttatttttaatttgaggagtgttaagaacacattctataacatagtccttcaaatacactcac-taattggttaaatttattaaaaattata---------------------------------------
 || |||||||| ||  ||||||| ||||   ||||||| |||| ||| ||||||| |||||||||||| ||||||||| | || |||||  | || |||||  | |||  |     ||    |  ||    || |    | | ||||     |  |         |||||   |||| || |   || || ||  | ||                                        
CATCGGTATAATCGGATCAATTGACCAAGAAATGCTTGCCAAAGGACGTGATACATGCAAGTACTTCACCAAAAATCATTTACTATATGAGAGGAACCAGgtgcgtattgaa-----aaaccaaaaagaaagaaaactttactatatagtgcggctcacagctattactcaagcaatttgtaatggttgttgaatctgatttcaaactaatgtaatgggtttgtgtttctaatacctcag

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 12
GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattt-tatttttaatttgaggagtgttaagaacacattctat--aacatagtccttcaaatacactcactaattggt-taaatttattaaaaattata----
|||||| ||||| ||  ||||||| |||||  |||||||||||| ||| |||||||| || || ||||| |||||||| ||||| |||||||| |||||||||| | ||| | ||  | || ||        ||||||| | |||| |  |   |     | ||| ||   |  |    |  | |  ||||  | | ||| ||     
GATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACATATAAATATTTCACCAAAAATCACATGCTCTATGAACGGAATCAGgtaacagtttattttcctcatctg--------taagaactctttctcttgacttttaaaatccaagtaggttgccattctcctatgtatttggtgataatcatgctca

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 7
GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattttatttttaatttgaggagtgttaagaacacatt-ctata-acat----agtccttcaaatacactcactaattggttaaatttattaaaaattata
| |||| ||  | || || || || |  |   |  |  | ||||  || || ||  ||||||  || || || |||||||||||||||||||| ||||||||  ||  |     || ||| ||   ||  | |     || || |||||   ||    ||| |||   | || ||   | |  |   | | |  || | |  |   
GGTTGGAATTTTGGGTCCTATAGACCCGGAGCTTTTAACCAAAGGGCGTGACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgt---ggttgaatgtgcccagcttaagtttgacttttctatacgtatttcgagtacttttgaaactctagtttacagtgcacactctttcagatat---

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 14
GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattttatttttaatttgaggagtg---ttaagaacacattctataacatagtccttcaaatacactcactaattggttaaatttattaaaaattata
| | || ||  | || || || || | ||   |  |   ||||| ||||||  |  |||||| |||||| ||||| |||| ||| |||||||| |||||||||||  |||  ||   | | |  ||  ||   || || |      |||   |    ||  |       | |||  || |  | |||||  | |    |  | 
GGTAGGAATTCTAGGTCCTATCGACCCAGAGCTTTTAAGTAAAGGACGGGACTCTCACAAGTTCTTCACCAAAAACCATACGCTCTATGAACGGAATCAGgtaagt-tttggttgaaagtatttggtatgagtttgagtatgttaactaatcctggatcactttcgagtattcaagaaat--taaaattggtcatgtctcttg