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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAAgtaagtatagactgaaccaaaatggccattttcaatttttcttttttgcttcaaattctcattaaatgttcttccatatacag

Basic information

species Glycine max
transcript GLYMA16G32480.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0036g00810.t01 (Vitis vinifera), 5'ss of exon 5
ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAAgtaagtatagactgaaccaaaatggccattttcaatttttcttttttgcttcaaattctcattaaatgttcttccatatacag--------------------
 |||| ||||| || || |||||||| |||||||| |||||||||||||| ||  |    ||||  |||   |||||||||   | | ||    ||  ||  ||| |  | ||     || | ||    |  | ||| |     | | || || ||                     
GTTGTCGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCAATAAACTTTTGTGTTCCAAgtaagtagttatttaaatggaa--gcattttcctctcttctaacttggattttggtggttatttat--accatgcaaatgcatcatcttcttgctttctatag

upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 6
ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAAgtaagtatagactgaaccaaaatggccattttcaatttttcttttttgcttcaaattctcattaaatgttcttccatatacag--------------------
 |||||||||| || || |||||||| |||||||| |||||||||||||| || ||    ||||  |||   |||||||||   | | ||    ||  ||  ||| |  | ||     || | ||    |  | ||| |     | | || || ||                     
GTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagttatttaaatggaa--gcattttcctctcttctaacttggattttggtggttatttat--accatgcaaatgcatcatcttcttgctttctatag