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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGATAAAACAGTGAAGgttggttttcacaccatttactggttatatatgtattgactatatgcaagttctggaattattatttgtttaacttttatttgatttatgcag

Basic information

species Glycine max
transcript GLYMA16G32370.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G51980.2 (Arabidopsis thaliana), 5'ss of exon 6
GCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGATAAAACAGTGAAGgttggttttcacaccatttactggttatatatgtattgactatatgcaagttctggaattattatttgtttaacttttatttgatttatgcag
 |||||| |||| ||||| || || ||  |||| |||||||||||| |  | |||||||| ||||||||||| |||||||||||||| || || || |||||| |||       | || |||  | ||| || | || | | |       ||||    ||| | | | |||    | ||              
ACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGACAACACGGTTAAGgttagttcgtctttctttaactt-tcataaatttcttaagt-ttcattctttctcttgttaatgtgtttttccgctgtag-------------

upper sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 5'ss of exon 7
GCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGATAAAACAGTGAAGgttggttttcacaccatttac-------tggttata--tatgtattgactatatgcaagttctgga-attattatttgtttaacttttatttgatttatgcag---------------------
||||||| | |||||  | || || || || || ||||| |||||| |||| ||||||||||| || ||||||||||||||  | |||  ||| || |||||| || |||     ||| |        |  |||||  | || | ||| |     ||||||||    ||| | | || | |  | | | | || ||| | |                       
GCAGTGTCTGCAGACGTTGACTGAACATACTTCAGTTGTAATGTCTCTTCTTTGCTGGGACCAGTTTCTTTTATCTTGTTCGCTTGATGGAACTGTAAAGgtttgtcttctttttattcatgcatttatccttataattttgcactgaatgctatcaagttctaagcattctaagttttctcccctctctctggttttttcctcttactttgtttctttggcag