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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtagacagagtcacttgttcatttttaaaactttgaattttactgcttcctcataatgattaatttttatacttcagagtcctgatatatatctatcacttaattgcatttcttgtaaag

Basic information

species Glycine max
transcript GLYMA16G30030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtagacagagtcacttgttcatt-tttaaaactttgaatttta-ctgcttcctcataatg-----attaatttttatacttcagagtcctgatatatatctatcacttaattgcatttcttgtaaag
||||||||||||| ||| ||||||||||||| |||||||| ||||| |||||||| |||||||| || || ||||| |||||||||||||||||||| ||||  |   ||| ||   ||  |  |  || | | |||| | || ||||||  |  | ||      |||| ||  | || |||| | |      |  | | |       ||    ||||| |||| ||
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacag