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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGgtttgtctgtccaatgaagttctattcctttcctttcaccatttatgtgcaaaacctcattcctaaacctttttgtgtccagctttcaaacttgacaatacttagtgtttgctttgcattttcatggaacttaacattgccctctttcctgtag

Basic information

species Glycine max
transcript GLYMA16G29760.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29760.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011893_T01 (Zea mays), 5'ss of exon 6
GATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGgtttgtctgtccaatgaagttctattcctttcctttcaccatttatgtgcaaaacctcattcctaaacctttttgtgtccagctttcaaacttgacaatacttagtgtttgctttgcattttcatggaacttaacattgccctctttcctgtag
 | |||  |||||||||||||||||| |||||||||| | |  | ||||| ||||||||||  ||||   ||||| |  | ||| |  |  |  || ||||||  | |      ||   |  |||||  ||    |    |||| | |        |  |  | ||   ||||  ||  |||                                                                        
AAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGGATTCAAAGTCACTTGAAGgttactattctttctgct-tgatattctattagggtttaaatttctttttcttttatgctgaccaatttttttcatg--cag------------------------------------------------------------------------

upper sequence: GLYMA16G29760.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G25720.1 (Arabidopsis thaliana), 5'ss of exon 6
GATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGgtttgtctgtc-caatgaagttctattcctttcctttcaccatttatgtgcaaaacctcattcctaaacctttttgtgtccagctttcaaacttgacaatacttagtgtttgctttgcattttcatggaacttaacattgccctctttcctgtag
 ||||||||||||| ||||| ||||| || ||||||| |  ||| |||||||||||||||| ||| ||||| ||||  || || ||||||||  | |||||||| |   |   | |||     | ||  |  ||||   ||| |||  |    ||     | | ||     |  | | |  ||| ||  |   || |  | ||  |                                                 
CATATGAAAGATGGATGGGGACTGGCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAGgtttcttgcttatactgattaagtttttgtgcccttgagccacttactt----aattatttacatagggagtagtatatttagcattttattgtgtctcttctctgcag----------------------------------------------

upper sequence: GLYMA16G29760.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g01140.t01 (Vitis vinifera), 5'ss of exon 6
GATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGgt-ttgtctgtccaa-----tgaagttctattcctttcctttcaccatttatgtgcaaaacctcattcctaaacctttttgtgtccagctttcaaacttgacaatacttagtgtttgctttgcattttcatggaacttaacattgccctctttcctgtag
 |||||   ||||||||||| ||||||||| ||||   | | ||||||||||||||||| | ||| ||| ||||||| |||||||||||| |  | |||||| || | | | |||     |  ||||| | | ||||  | | || |||||| |   |            ||   ||| | | ||   ||||     | ||                                                           
CATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTGATCCTCAATCAATGAAAGgtcttttttatacaaattctttcagttccagtacttttttctaacaatttatttttgaggtagaggctacaattttttctctttc---cttttgggatggagg---------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606901|gb|AI900999.1|AI900999
EST:     AAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAG                         TTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCA
genomic: AAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGgtttgtctgt ... tttcctgtagTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCA