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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGTGTTTGCTTTGACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccctcattcattgttcttgcaattataattattagaacaaagcttggatgcaatctcttaaatgttttcattgatgttctccaattaaaatta...

Basic information

species Glycine max
transcript GLYMA16G28310.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269057|gb|CA820120.1|CA820120
EST:     GGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA                         ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
genomic: GGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
EST: gi|6070043|gb|AW099600.1|AW099600
EST:     ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA                         ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
genomic: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
EST: gi|192304054|gb|FG993884.1|FG993884
EST:     ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA                         ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAGCCAACCATAGAAGAT
genomic: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT