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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCTTCAGTTGTTCCGGATGGGATTGTATGTTTCTTTGTTAGTTACTCATATATGGATGGGATAGTCAATACTTGGAATGAAAATGGAATTTTAAAGgttagttagattctttgatatccagtccacgggtagagtagtagtatttgttatatagtttggtggtgtgctaaaagcatcttttttttccag

Basic information

species Glycine max
transcript GLYMA16G28290.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 6
AATGGCTTCAGTTGTTCCGGATGGGATTGTATGTTTCTTTGTTAGTTACTCATATATGGATGGGATAGTCAATACTTGGAATGAAAATGGAATTTTAAAGgttag-ttagattctttgatat-ccagtccacgggtagagtagtagtatttgttatatag----tttggtggtgtgctaaaagcatcttt--tttttccag----------------------------------------------------
 ||||  ||  ||||||| |||||  |||| || ||||||||||||||||||||||||||||| ||  |   ||| |||||||||| ||||||| | ||||| || |    ||| | | | | |||  |||    |    |   ||| ||   |  || |    |||  || |   || |||  || |||  ||  | |||                                                    
GATGGTATCTATTGTTCCTGATGGAGTTGTCTGCTTCTTTGTTAGTTACTCATATATGGATGGCATTATTGCTACATGGAATGAAACTGGAATTCTGAAGgtaaggtcttcttcatcgctttaccatgccagtaattttttcagagttttgcatgaattggaatttttatgatac-ctcaaaatatttttagttgcttcaggcattaatgtatatttgtttactgatattaccaattctcttaatgtttgtag

upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 6
AATGGCTTCAGTTGTTCCGGATGGGATTGTATGTTTCTTTGTTAGTTACTCATATATGGATGGGATAGTCAATACTTGGAATGAAAATGGAATTTTAAAGgttagttagattctttgatatccagtccacgggtagagtagtagtatttgt---tatatagtttggtggtgtgctaaaagcatcttttttttccag----
 ||||  || |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||   |     ||  |   |  ||     ||| |       | ||      ||| |  |||     | | ||  | |||||      |  ||     
GATGGTGTCTGTTGTTCCCGATGGGATTGTATGTTTTTTTGTCAGTTATTCATATATGGATGGAATTGTCAATACTTGGAATGAAAGTGGAATTTTAAAGgtgagaatgtgctattcttcatctctcattttgtataacctccatgttgaaaaatatctctttttcccttttactttaggcatcccaacatatcacccat

upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S145_26V6.3 (Physcomitrella patens), 5'ss of exon 8
AATGGCTTCAGTTGTTCCGGATGGGATTGTATGTTTCTTTGTTAGTTACTCATATATGGATGGGATAGTCAATACTTGGAATGAAAATGGAATTTTAAAGgttagtt--agattc--tttga----tatccagtccacg------ggtagagtagtagtatttgttatatagtttggt-ggtgtgctaaaagcatcttttttttc-cag----------------------------------------------------------------------------------
 ||||   | | |||||||||||| || || ||||||||||| ||||| || || |||||||| || || |||| ||||||||| |  || || ||  |||| | ||  | || |  |||||    |   ||||  ||        |||   |    | || |||||  ||  || || ||||  ||   |  ||    |   || |||                                                                                  
GATGGTCACTGCTGTTCCGGATGGAATCGTGTGTTTCTTTGTCAGTTATTCCTACATGGATGGAATTGTTAATAGTTGGAATGAGATGGGTATATTGCAGgtcattttcacatccactttgaacatttctcagtttacactatttagtatgttcagggaatgtgttaattaaattagtaggtggcctgtgacaatgaactacctcacagaaatgactcaatcatggaatgatacgctttctcagtgaatcgtgcattcctctatactcattctttttcgctttggctacag