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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGTGACACAATTGGATGGCACTAAATTGTCCTACACAGCAAAGCACATATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgcctgttttgaaatatcattgcaaaatgatcttacttacatgattgtttctgtttgtgagtataatatttgatatgtacatgctaataagaa...

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g56850.4 (Oryza sativa), 5'ss of exon 3
TGAGGTGACACAATTGGATGGCACTAAATTGTCCTACACAGCAAAGCACATATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgcctgttttgaaatatcattgcaaaatgatcttacttacatgattgtttctgtttgtgagtataa--tatttgatatgtacatgctaataagaa-
||| || ||| |    |||||  | ||       || |||||||||||||||||||| |||||||| ||| | |||||||||   || ||||||||  |||| |       |  | ||  |   | ||||||| |  | |    |   ||     |  |   |   | | | |  | ||||| |  | | |  || |    | 
TGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGATATACAGCAAAGCACATATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaa--caaaattctctgcca-gcctttgcaaacttgtttcttatgtctggcaagtagttaatagcattgttacttgtttgacaacttctttatattccccaa

upper sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G24170.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGTGACACAATTGGATGGCACTAAATTGTCCTACACAGCAAAGCACATATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgcctgttttgaaatatcattgcaaaatgatcttacttacatgattgtttctgtttgtgagtataatatttgatatgtacatgctaataagaa----
 ||||||| |||| | |||||||| ||| |    || || |||||||||||||||||||| ||||||||  |||| |||   || |||||||||||||| || | |||  |||| || |  |    ||    |   |   || |   ||| |  ||  | ||| |||    | ||| |     |||  | |    ||||     
GGAGGTGAGACAAATAGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagttt--ctgtgttcatgttattttttttatctactatagtgtgatg-tgcttggtatttatgaaatcattatcttcagagtaagt-ccggaaagatttta

upper sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 5'ss of exon 7
TGAGGTGACACAATTGGATGGCACTAAATTGTCCTACACAGCAAAGCACATATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc----ctgttttgaaatatcattgcaaaatgatcttact-tacatga-ttgtttctgt--ttgtgagtataatatt-tgatat--gtacatgctaataagaa
||||||||||||| | ||||||||||| ||||  ||  |||||||||||||||||||||||||||| || |||||||||||||||| |||||| || ||||| ||||| |    ||  |||  |||||  ||  | | |||   |  | ||||  |  || || ||   || ||||| ||| ||  |||| |  || |||           
TGAGGTGACACAACTAGATGGCACTAAGTTGTGTTATTCAGCAAAGCACATATTGATTGCAACTGGTAGTAGGGCTCAACGTCCAACTATTCCAGGGCAGgtaaattttctgatcttctttccaatattgtttgagattgaatatggtatacacaaactggttttgaaattatgagtttaagatcctgatttcagtccat-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193865|gb|HO040513.1|HO040513
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCAGGACAG                         GAGTTGGGTATAACTTCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|27424557|gb|CA936077.1|CA936077
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|254323260|gb|GR840065.1|GR840065
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|9901924|gb|BE610892.1|BE610892
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|151394106|gb|EV263977.1|EV263977
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|8670051|gb|BE191158.1|BE191158
EST:     TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: gi|193492241|gb|FK455267.1|FK455267
EST:     CAGGGCTCAACGTCCAAATATTCCTGGACAG                         GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: CAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA