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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgctaaatttgaactgcgattactgtttcatatttgtttgttttcactaactctgttctagctgttaatacttgtagcttaattgatggtcttttatcag

Basic information

species Glycine max
transcript GLYMA16G26550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgctaaatttgaactgcgattactgtttcatatttg--tttgttttcactaactctgttctagctgtta-atacttgtagcttaattgatggtcttttatcag
|||||||||||||| || |||||  |||| ||||| || || ||||| || ||||||||||| |||||||| |   |  |||| ||||||||    ||  |  |      | | ||| |||   |   |   || ||      |  | || |   ||| | | || |    |  ||  |   |||||  |||
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgctttt--cag

upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgctaaat-ttgaactgcgattactgtttcatatttgtttgttttcactaactctgttctagctgttaatacttgtagcttaattgatggtcttttatcag
|| ||||| ||||| || |||||  |||| |||||||| ||||| || || |||||  |||| |||||||||||||| || || |||||||| || |      |||| ||  || |  |||   |    | ||| ||||| ||| | ||  ||  |||||  | |||  |   |  |||||         
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactacctcgctgcaat--ctttaacatgcattaccgattt-actaagtctctgct--cttctaatatctttagtatgcct--tggtcacag-----

upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgct-aaatttgaactgcgattactgtttcatatttgtttgttttcactaactctgttctagctgttaatacttgt--agcttaattgatggtcttttatcag
|||||||||||||| || |||||  |||| || || || |||||||| || || ||||| || ||||||||||||||| | || ||||||| | |||| |||| || | ||  | || |  | ||      | | | ||  |   ||        || | ||     |  || |   || |  | || ||||
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgat-ttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag