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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTGCTACAGTTAGATGTACTTCATCTTTAATTTTTGCCTCCATAGGAGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgtaaacaacacattcagagaattacaagattgttgcatattacttgaattttgtgatttaaggtatcgtgtgaatgaactttttcatagcac...

Basic information

species Glycine max
transcript GLYMA16G26380.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g00180.t01 (Vitis vinifera), 5'ss of exon 5
TTCAT-TGCTACAGTTAGATGTACTTCATCTTTAATTTTTGCCTCCATAGGAGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgtaaacaacacattcagagaattacaaga-ttgttgcatattacttg--aattttgtgatttaaggtatcgtgtgaatgaactttttcatagcac-------------------------------------
  | | | |||| || | ||||  | ||||  || ||||||| ||||||||||| || |||||||| |||||| | ||||| ||   |||||||||| ||||||||    |   |  | |    |     | | ||   || |||   | |   ||  | |||  | |||| |   |  ||   || |||    |   |   |                                      
-ACGTGTACTACTGTCAAATGTGGTGCATCACTAGTTTTTGCTTCCATAGGAGCCGGGATTGGTGCCACCCTTTTCCGTCCTTCAGCCGGCCAGTGGATTGgtaagtacatctcctcctccaagactacctgataaagctttttgtggaatctctgtaagtttgctaattttatagaatgtagaaaggaaaagatctctgatatgtaaaatttccaatactaaaatgtacttttcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33387500|gb|CA850707.1|CA850707
EST:     AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGCGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
EST: gi|58015676|gb|CX702418.1|CX702418
EST:     AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
EST: gi|193471328|gb|FK438445.1|FK438445
EST:     CGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: CGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
EST: gi|33388517|gb|CA851724.1|CA851724
EST:     AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGCGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
EST: gi|58015425|gb|CX702167.1|CX702167
EST:     AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: AGCAGGAATTGGTGCAACCCTTATTCGTCCATCGCTCGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
EST: gi|208045158|gb|GD843248.1|GD843248
EST:     TCGGCCAGTGGGTTG                         GGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG
genomic: TCGGCCAGTGGGTTGgtaagattgt ... ctcttttcagGGTGTGCTCTTGGTGATTTGGGTGGTCCCATCATTGTAGCATTTTGTGCTG