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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaattgatttttttttttaattgatgttaacgaagaatccactatcacaagtcatgatttctgttaatgtttgaatggta...

Basic information

species Glycine max
transcript GLYMA16G26360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaattgatttttttttttaa--ttgatgttaacgaagaatccactatcacaagtcatgatttctgttaatgtttgaatggta
|||| ||||||||||| || || ||||||||||||||  ||||||||||||||||  |  | ||| ||||  | |||  ||   |  ||||| | || | ||| |  |   |    |    |  | |||| |||||   |  |  |  ||     | ||||   ||    ||   | |||   ||||  | ||  ||  |  
GGCGGGGCATTGGAATCGACCGGACAACTGATTACTTCTTCATGGAGAAAGTGGATGTAATAATATCACGGGTGTGGAGATCATTGCTAAGAGTTACAAAgtatgataatgtggttcaataacatcatttctttttcatacttcaagattggaagataatcatttactttaaa--acgatgg-tgttggttttacaacag--

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaattgatttttttttttaattgatgttaacgaagaatccactatcacaagtcatgatttctgttaatgtttgaatggta---
| || |||||||||||||| || ||||| ||||||||| ||||||||||| ||||  || ||||| | ||   ||||   |   |  | ||| | || |||||     || |   | | | || |  |   | ||   || | |    |   || ||   | |||       ||   |  |||  |||  |    |  |    
GTCGGGGCATTGGAATTGACCGTACAACCGATTACTTTATCATGGAGAAACTGGATGTGATCATATCCCGAGCTTGGAGCTCATTGCTCAGAGTTACAAGgtatctgtcattttgaatagaaacttttaggtcttggaaaatcaatccagaaaacaaa--attattgtggtgcacagta-ctgagaatcctactttcttgcag

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011136_T01 (Zea mays), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaattgatttttttttttaattgatgttaacgaagaatccac---tatcacaagtcatgatttctgttaatgtttgaatggta------
| || |||||||||||||||||||||||||| |||||| |||| |||||||| ||  |  | ||| | ||   ||||   |   |  | ||  | ||||||||     |||||       | |    ||| |||||| ||   |   ||    || || ||    |||   | |   | ||  |  | |||  || | |  ||      
GTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTTTCATTGAGAAAGTAGATGTAATGATATCCCGAGCTTGGAGGTCATTGCTCAGGGTTACCAGgtatctg-cactcttttgcagcaaccttttgttttttgaacccaatgtactccagtatacaaaaatattgtatggtgttataccaatgaattctt-atttttactacag

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G527387_T01 (Zea mays), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaattgatttttttttttaattgatgttaacgaagaatccactatcacaagtcat-gatttctgttaatgtttgaatggta------
| || |||||||| |||||||| |||||||| |||||  ||||||||||||||||  |  ||||| | ||    |||   |   |  |  || | || |||||    || || | |       |  || || |||    ||     |  |   |   | | | |      | | | |||||  |   |       | |         
GTCGGGGCATTGGGATTGATCGGACAACTGACTACTTCTTCATGGAGAAAGTGGATGTCATCATATCCCGAGCATGGAGGTCATTGCTTCGAGTCACAAGgtataacacgctgata-------tcaatcttctttcactatcaggatcgatagactgttctcaaggtggtgccctcgattttggaggacacaaagaagactgatgga

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGgtaaggaacactcacactgggaa---ttgatttttttttttaattgatgttaacgaagaatccactatcacaagtcatgatttctgttaatgtttgaatggta
| || ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||  ||||| | |||| |    | || | | | || ||| ||| ||   |||  ||    |   | ||  | ||||||||    ||  |   || ||||  |  |       |   |  |  | | ||| ||    ||   
GACGCGGCATTGGAATAGATCGAACATCTGATTACTTTTTCATGGAGAAAGTGGACATGATCATTTCACGTCTATGGTTAATGCTTTTGAAATTGACTAGgcaagtaattatcatgcttcataacttggaaatgtttttttaggatattatggagatgaattaagaacttagtatttagcatagtttaaatattaatctg---