Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATTTGATTATTAGTGATTCATTGAACCACAACTCAATTGTTAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATGgtgggtatcgttattttctgtgtactagaataagtattatgaattagtcattgagtgggccagcttttcaatttccacatattgttatgaaaattgaaaa...
Basic information
species | Glycine max |
transcript | GLYMA16G26210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 6
GGAAATTTGATTATTAGTGATTCATTGAACCACAACTCAATTGTTAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATGgtgggtatcgttattttctgtgtactagaataagtattatgaattagtcattgagtgggccagcttttcaatttccacatattgttatgaaaattgaaaa
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GGTGGGCTGATAATTAGTGACTCACTGAACCATAACTCAATTGTCAATGGTGCAAGAGGATCCGGTGCAACCGTTCGGGTTTTCCAGCATAACTgtaagcttttatgcctt---tatgcaatgcgaagcaatattcactgtttgt--ggttcacaaggacttatttgtcagcatgctgcttacag---------
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 6
GGAAATTTGATTATTAGTGATTCATTGAACCACAACTCAATTGTTAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATGgtgggtatcgttattttctgtgtactagaataagtattatgaat----tagtcattgagtgggccagcttttcaatttccacatattgttatgaaaattgaaaa
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GGAGGCTTAATTATTAGTGATTCCTTGAATCATAGCTCCATTGTGAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttgatgtggcatatatggtttt-tactttttaaaaatatgatgcctataaggtgtcttagctagagggcagttaaatctggctt---gagttaaagcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730538|gb|BM525934.1|BM525934EST: TAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATG AGCCATCTCATCTAGAAGAAGTGTTGAGAGAACAAATTGCTGAGGGACAAC
genomic: TAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATGgtgggtatcg ... ttacctacagAGCCATCTCATCTAGAAGAAGTGTTGAGAGAACAAATTGCTGAGGGACAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATTTGATTATTAGTGATTCATTGAACCACAACTCAATTGTTAATGGTGCACGAGGATCAGGAGCAACAATTCGTGTTTTTCAACATAATGgtgggtatcgttattttctgtgtactagaataagtattatgaattagtcattgagtgggccagcttttcaatttccacatattgttatgaaaattgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA