Sequence
atgc intronic sequence ATGC exonic sequenceATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaacaaatttccctttattagttttccatttctcttgattgaggttataatatgctcttttttggtttctaatag
Basic information
species | Glycine max |
transcript | GLYMA16G25820.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaat--tattattactctcaaaaca--------aatttccctttattagttttccattt-ctc-ttgattgaggttataatatgctcttttttggtttctaatag-----
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GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G843914_T01 (Zea mays), 5'ss of exon 8
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaat----tattattact--ctcaaaacaaatttccctttattagttttccatttctcttgattgaggttataatatgct-cttttttggtttctaatag
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GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactctactgattgtagttcgccaaaaatttcttggcacttgacgtgctttgttcttgat-ggggtcccattgtaatactttcacag----------
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G469304_T01 (Zea mays), 5'ss of exon 5
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattatta--ttactctcaaaacaaatttccctttattagttttccatttctcttgattgaggttataatatgctcttttttggtttctaatag
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GTCACTTGTGCAGCTTCTCGAAAGCGTTGATCTCAGCGGGATGAAACATGAAGAGAAGCTCGCTTTCTGGATCAACGTGCATAATGCGATGATGATGCATgtaactattttcttgccctgatcctcgatattcttaaaccgtaccggcgggccgatgggtttcgatctaaacgtttgatgtttt--tttttgtcag
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G66600.1 (Arabidopsis thaliana), 5'ss of exon 6
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaacaaatttccctttattagttttccatttctcttgattgaggtta--taatatgctcttttttggtttctaatag
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GTCACTTATTAGTAGATTGGAGGAAGTCGATCCAAGGAAGTTGAAACATGAAGAGAAGCTAGCGTTTTGGATAAATGTGCACAATGCACTTGTGATGCATgtaaaacctctttctttcaag---aacttatctcagtt---tttctatacgcctacattttggtttcttatcaaaatttctttgaatatattttag
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 9
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaac----aaatttccctttattagttttcca----tttctcttgattga-ggttataatatgctcttttttggtttctaatag
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ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCATTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccttcttgattaaactatgaaatttgcaaggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaac----aaatttccctttattagttttcca----tttctcttgattga-ggttataatatgctcttttttggtttctaatag
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ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8285798|gb|BE023357.1|BE023357EST: AGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT GCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTT
genomic: AGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattatta ... tttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaacaaatttccctttattagttttccatttctcttgattgaggttataatatgctcttttttggtttctaatag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT