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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaacagattatcattagtacatgtgctttaactcacttttcaaaataataacatgctgaaatctaaacagggtctctttttccttttacaattat...

Basic information

species Glycine max
transcript GLYMA16G25600.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402272|gb|EV272085.1|EV272085
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAGCCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|23064117|gb|BU578890.1|BU578890
EST:     TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACATG                         TANT-TGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACA-Ggtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|20448522|gb|BQ252646.1|BQ252646
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|7924295|gb|AW830321.1|AW830321
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|9565806|gb|BE475315.1|BE475315
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG