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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg...

Basic information

species Glycine max
transcript GLYMA16G25450.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 7
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg
|||||||| |||||||||||||| |||||||||||||| || || || ||  |||||||||| ||||||||||| |||||||||||||||||||||||||   | |  |||       |      |    |  | |||| | ||  |  ||| ||||| | |    |  ||  |   | |  | |        
GATTTCAAGATTCAGAACATTGTTGGCTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagtt--gagtccttg------catgcctttttaggacgcctttcacatttgt-tatgttgttcttatgtcctgtgcctt-ttgtgttaacag-----

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 6
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg
|| ||||| |||||||||||||| || ||||||||||| || || || ||  |||||||||| ||||||||||| |||||||||||||||||||||||||   | |  |||           || |   |   ||  ||| | ||| | ||| || |  | |   |||    |||    |  ||   |  || 
GACTTCAAGATTCAGAACATTGTTGGTTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagtt--gaatccttgca---------tgtttttttaggatatttctttcaca-tatgttatgct-attctcatgtcttgtgccttttgtcttccag-

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g29660.2 (Oryza sativa), 5'ss of exon 4
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtt------ttaattttttgggaaaat--aaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatc-----ctgatgtttagg-------------------------------------------
|||||||| || ||||||||||| || || ||||||||||| || || || || |||||||| ||||| ||||| ||||| || ||||| ||||||||||      ||| ||||||          | | ||   |||    | ||  ||   |    ||     ||     || ||| |  |  | ||     |  || |||                                              
GATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTgtaagttgattacttacttttttacattgtctcagaatgcatcctttgaatttccattgaaactgatgccagttgtctgataaatatcagtgtgtcatttacccatatttcatcatgcatgtcattattttgactgttcacttgcttaatttgcag

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 7
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatg-tttggctatcctgatgtttagg
||||| || |||||||| ||||| |||||||||||||||||||| || ||  |||| ||||| ||||||||||| |||||||| |||||||||||| ||   |   |   ||   | |  ||    ||   || | | || || |    |  | ||  |||      ||||   |   |    || | | ||| 
GATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTCAAGTTTCCAATTAGGCTTGAGGGCCTTGCATATTCTCATGGTGCCTTCTCAAGTgtatgtccaaggat---ggtttattttatca--ccacagtaattcttttaccctttttgtctgcattcttggataatgacatttttcatttgttttatag-

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttt--taattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg
|| || || |||||||| ||||| |||||||||||||| ||||| || ||  |||| ||||| ||||| ||||| |||||||| |||||||||||| ||    | |||  ||        |      |   |  |  ||||| | |     | |    | ||   | |  |  |||   |    || | |  || 
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttg---tctcccttcttggaatttgacattt--ttcatttgttttacag-

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: AT3G13445.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggt-gacttttatatcagaatattttgttttcacaatcaatgtttggctatc---ctgatgtttagg---
|||||||| |||||||| ||||| || |||||||||||||| ||||| ||| | || || |||||||| || || || | ||||||||||||||| |||  |  |   ||    |  ||   | |||   |   |||||||| |    || |  ||||  | |    || |   |  || ||    ||  || | |    
GATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCACGCTGCTTTCTCAAGTgtgagtgatcttaacttatacatttag--tagtcaaggaccgacttttagagataaaaacgttgtgctgatggccattacctctctctcatattggcgtgtggttag

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggct-atc-ctgatgtttagg
||||| || || ||||||||||| ||||| ||||||||||| ||||||||  |||| || ||||||||||| || ||| ||||||||||||||||||||    || |       ||  |   || ||     |   | | | ||  |  |   | | | | |  ||  ||   |  || |||  |||||      
GATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAGTGCTTTCTCAAGTgtaagt---gatctc------aagcattgtgatcatatatacttgtaacatgggtgttaatcggtctgatgattcatacctctctcatcattgatgccag--

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 7
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaa--ttttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg--
||||| || ||||||||||| || ||||| |||||||| || ||||||||| |||| || || ||||||||||| |||||||| || || || ||||||  | |  || |||  | |  | ||||  |   |  | | |||| | | | ||| |      | |      | |   ||  ||  || | |||      
GATTTTAAGATTCAGAACATAGTTGGCTCCTGTGATGTTAAATTCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagtgatgacattgttttcggagttcaattatt---tatttatttttctgtaaaaatgtgaaccatacttgggaagt-catgtttaaactaaggttggaaca

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S246_34V6.1 (Physcomitrella patens), 5'ss of exon 6
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttt---aattttttggga--aaataaattggt-ccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg
|| |||||||||||||| ||||| || || ||||| || |||||||| || ||||| |||||| | |||||| ||||||||  ||| |||||||| ||   |    | ||  |   |  || || |    |  | |  ||  ||  || |    | ||  || ||||     | |   |||   ||  ||         
GACTTCAAAATTCAGAATATTGTTGGATCATGTGACGTGAAGTTCCCTATCCGGCTCGAGGGTTTAGCATATGCCCATGGTCATTTTTCAAGTgtgagcactccggacttgcttacacgaagtagaaaaatatcttattgtgttaaattttcagaaatgatggtttctttgcccaaacttgatgattgtgtga------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207777564|gb|GD746643.1|GD746643
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208062592|gb|GD860697.1|GD860697
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193614819|gb|FK562829.1|FK562829
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|207832751|gb|GD803567.1|GD803567
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193356193|gb|FK321394.1|FK321394
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGC
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGC
EST: gi|193570275|gb|FK526228.1|FK526228
EST:     TCTTGCATATTCCCATGGTGCTTTCTCGAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: TCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT-AA
EST: gi|193394019|gb|FK358556.1|FK358556
EST:     CGGCCGGAGGGTCTTGTCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAA
genomic: CGGCTGGAGGGTCTTG-CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193656727|gb|FK603759.1|FK603759
EST:     GGGTCGTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTC-TTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193690033|gb|FK634064.1|FK634064
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208332947|gb|GE130360.1|GE130360
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208249868|gb|GE048711.1|GE048711
EST:     AGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: AGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|254320724|gb|GR827173.1|GR827173
EST:     TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|207684739|gb|GD666714.1|GD666714
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193547846|gb|FK504679.1|FK504679
EST:     GGGTCTTGCATATTCCCATGGTGCTTCCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208030678|gb|GD831166.1|GD831166
EST:     GCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193650388|gb|FK598115.1|FK598115
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193705794|gb|FK643604.1|FK643604
EST:     CATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|207782140|gb|GD753711.1|GD753711
EST:     CGGCTGGGGGGTCTTGTCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTG-CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|207788728|gb|GD761644.1|GD761644
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193494312|gb|FK462752.1|FK462752
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193598761|gb|FK554129.1|FK554129
EST:     CTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208332302|gb|GE126523.1|GE126523
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208122006|gb|GD917643.1|GD917643
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAATCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208074510|gb|GD868231.1|GD868231
EST:     CCCATACGGCCGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193311605|gb|FK275515.1|FK275515
EST:     TCCCCATACGGCCGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|208023460|gb|GD821680.1|GD821680
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193570425|gb|FK525370.1|FK525370
EST:     CGGCTGGGGGGTCGTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTC-TTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|207779717|gb|GD752549.1|GD752549
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193706474|gb|FK646714.1|FK646714
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193410389|gb|FK380240.1|FK380240
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193401050|gb|FK370105.1|FK370105
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|14258923|gb|BG881840.1|BG881840
EST:     TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT
EST: gi|208111655|gb|GD911921.1|GD911921
EST:     CCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193497917|gb|FK458713.1|FK458713
EST:     GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata